Gene omics information

Query gene ID	U43494_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	87.1	U43494_at	U43494	-	-	3e+0	At3g53490	unknown protein	S.X.	H.G.	Please select
0.58	74.9	Contig12526_at	Contig12526	-	-	9e-1	At5g23280	TCP family transcription factor, putative	S.X.	H.G.	Please select
0.58	74.9	Contig11041_at	Contig11041	-	-	1e+0	At3g08940	LHCB4.2 (light harvesting complex PSII)	S.X.	H.G.	Please select
0.49	63.7	Contig1204_s_at	Contig1204	cytosolic heat shock protein 90	-	0	At5g56010	HSP81-3	S.X.	H.G.	Please select
0.48	63.2	Contig19645_at	Contig19645	-	-	5e-1	At4g19610	RNA binding / nucleic acid binding / nucleotide binding	S.X.	H.G.	Please select
0.48	63.2	Contig16898_at	Contig16898	-	-	1e-1	At1g44608	unknown protein	S.X.	H.G.	Please select
0.47	62.2	Contig699_s_at	Contig699	-	-	1e+0	At3g07425	unknown protein	S.X.	H.G.	Please select
0.44	58.9	Contig11519_at	Contig11519	-	-	2e-4	At1g66680	AR401	S.X.	H.G.	Please select
0.44	58.9	Contig11168_at	Contig11168	-	-	1e-15	At5g12480	CPK7 (calmodulin-domain protein kinase 7)	S.X.	H.G.	Please select
0.43	56.4	Contig6535_s_at	Contig6535	-	-	5e-34	At2g42500	PP2A-4	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
65.3	100.0	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
22.8	99.8	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
22.5	99.8	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
13.6	99.5	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
12.3	99.4	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
11.9	99.3	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
11.2	99.2	GSM261029	ABA-Late-rep3	GSE10328	ABA experiment
8.9	98.9	GSM431568	pathogen isolates: Mock inoculated control - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
8.5	98.8	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
7.8	98.6	GSM431551	pathogen isolates: Polymyxa graminis - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	6e-6	50	rbah38o04_s_at	rbah38o04	-	-	1e+0	At3g57072	unknown protein	C.G.	S.X.	Please select
0.02	9e-2	36	Y09233_at	Y09233	-	-	1e-17	At5g13930	TT4 (TRANSPARENT TESTA 4)	C.G.	S.X.	Please select
0.04	4e-1	34	Contig21771_at	Contig21771	-	-	4e+0	At2g20515	unknown protein	C.G.	S.X.	Please select
0.02	4e-1	34	Contig13986_at	Contig13986	-	-	4e-33	At1g15520	PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)	C.G.	S.X.	Please select
0.05	4e-1	34	baak36d21_at	baak36d21	-	-	2e+0	At3g12470	nucleic acid binding	C.G.	S.X.	Please select
0.01	1e+0	32	Contig8345_at	Contig8345	-	-	5e-12	At1g51570	C2 domain-containing protein	C.G.	S.X.	Please select
0.03	1e+0	32	Contig12913_s_at	Contig12913	-	-	6e+0	At5g01840	OFP1 (OVATE FAMILY PROTEIN 1)	C.G.	S.X.	Please select
0.03	1e+0	32	Contig777_at	Contig777	-	-	1e+0	At2g42000	plant EC metallothionein-like family 15 protein	C.G.	S.X.	Please select
0.03	1e+0	32	Contig9172_at	Contig9172	-	-	4e-4	At3g62020	GLP10 (GERMIN-LIKE PROTEIN 10)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At3g53490	824517	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	2e-5	50	Glycine max	Gma.9072.1.S1_at	CA802814	-	-	3e-4	At5g13930	TT4 (TRANSPARENT TESTA 4)	C.G.	S.X.	Please select
0.14	6e-3	42	Oryza sativa	Os11g0529133	9639.m02959	-	-	6e+0	At2g15050	LTP	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e-1	36	Populus trichocarpa	PtpAffx.204321.1.S1_at	pmrna8505	-	-	1e-1	At3g04380	SUVR4	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.08	2e-4	46	Triticum aestivum	TaAffx.15439.1.A1_at	BQ169073	-	-	3e+0	At3g23950	F-box family protein	C.G.	S.X.	Please select
0.04	2e-1	34	Vitis vinifera	1617917_at	CF405637	-	-	4e+0	At1g53100	acetylglucosaminyltransferase	C.G.	S.X.	Please select
0.07	5e-3	40	Zea mays	Zm.15703.1.A1_at	CD441403	hypothetical protein LOC100272924	-	8e-1	At2g14247	Expressed protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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