Gene omics information

Query gene ID	TaAffx.98307.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	92.2	TaAffx.98307.1.S1_at	CA649031	-	-	7e-2	At4g36950	MAPKKK21	S.X.	H.G.	Please select
0.67	86.3	Ta.11895.1.S1_at	BQ171007	-	-	4e-6	At1g25280	AtTLP10 (TUBBY LIKE PROTEIN 10)	S.X.	H.G.	Please select
0.60	81.0	TaAffx.84352.1.S1_at	CA638782	-	-	5e-43	At3g61650	TUBG1 (GAMMA-TUBULIN)	S.X.	H.G.	Please select
0.53	74.9	Ta.4932.3.S1_x_at	BJ319726	-	-	4e-28	At5g22330	RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1)	S.X.	H.G.	Please select
0.27	35.6	Ta.22929.1.S1_at	CA702369	-	-	8e-2	At5g27740	EMB2775 (EMBRYO DEFECTIVE 2775)	S.X.	H.G.	Please select
0.19	22.4	Ta.6498.1.A1_s_at	BJ228594	-	-	1e+0	At3g45285	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.7	98.4	GSM298059	Crown tissue of Harnesk at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.6	98.3	GSM298062	Crown tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.5	98.3	GSM298073	Crown tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.9	98.0	GSM298061	Crown tissue of Harnesk at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.4	97.7	GSM298060	Crown tissue of Harnesk at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.1	97.5	GSM298074	Crown tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.0	97.4	GSM298083	Crown tissue of Solstice at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.0	97.4	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.7	97.1	GSM298064	Crown tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM298071	Crown tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	1e-34	147	Ta.4518.1.S1_at	BJ267553	-	-	4e-1	At5g17220	ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12)	C.G.	S.X.	Please select
0.03	1e+0	34	TaAffx.51187.1.S1_at	CA729741	-	-	4e+0	At5g25560	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	4e+0	32	TaAffx.51814.1.S1_at	CA718621	-	-	1e+0	At3g03420	Ku70-binding family protein	C.G.	S.X.	Please select
0.03	4e+0	32	TaAffx.38550.1.A1_at	BJ219501	-	-	1e+0	At5g40451	unknown protein	C.G.	S.X.	Please select
0.03	4e+0	32	TaAffx.35508.1.S1_at	BQ606379	-	-	1e+0	At5g40590	DC1 domain-containing protein	C.G.	S.X.	Please select
0.02	4e+0	32	TaAffx.132012.1.S1_s_at	CA592986	-	-	6e+0	At5g42635	glycine-rich protein	C.G.	S.X.	Please select
0.02	4e+0	32	Ta.1796.1.S1_at	AJ611102	-	-	4e-12	At4g27880	seven in absentia (SINA) family protein	C.G.	S.X.	Please select
0.04	2e+1	30	TaAffx.86157.1.S1_at	CA615825	-	-	4e+0	At3g15640	cytochrome c oxidase family protein	C.G.	S.X.	Please select
0.03	2e+1	30	TaAffx.82331.1.S1_at	CA673505	-	-	4e+0	At2g43450	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e-2	38	Arabidopsis thaliana	At4g36950	3770588	MAPKKK21	member of MEKK subfamily	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e+0	32	Glycine max	GmaAffx.63799.1.S1_at	AW101633	-	-	3e+0	At5g56710	60S ribosomal protein L31 (RPL31C)	C.G.	S.X.	Please select
0.47	2e-160	563	Hordeum vulgare	Contig13025_at	Contig13025	-	-	3e-12	At1g26260	CIB5 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5)	C.G.	S.X.	Please select
0.20	6e-10	65	Oryza sativa	Os06g0275600	AK103853.1	-	MYC1	2e-17	At1g68920	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	6e+0	32	Populus trichocarpa	PtpAffx.222642.1.S1_s_at	pmrna40188	hypothetical protein	-	2e-12	At5g25150	TAF5 (TBP-ASSOCIATED FACTOR 5)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e+0	30	Vitis vinifera	1618900_at	CD802451	-	-	1e+0	At1g35260	MLP165 (MLP-LIKE PROTEIN 165)	C.G.	S.X.	Please select
0.03	3e+1	28	Zea mays	ZmAffx.886.1.A1_at	AI770831	-	-	8e-1	At5g22220	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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