CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID TaAffx.9386.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.92 98.5 TaAffx.9386.1.S1_at CA600245 - - 1e-3 At3g53235 unknown protein S.X. H.G.
0.60 81.0 TaAffx.82822.1.S1_at CA666392 - - 1e-9 At1g13980 GN (GNOM) S.X. H.G.
0.55 76.8 TaAffx.114925.1.S1_at CF133462 - - 5e-1 At5g25220 KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3) S.X. H.G.
0.50 72.4 TaAffx.87223.1.S1_at CA593680 - - 4e-6 At2g32700 WD-40 repeat family protein S.X. H.G.
0.46 66.8 Ta.30599.2.S1_at BJ256833 - - 2e+0 At5g05960 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
0.45 65.2 TaAffx.102946.1.S1_at BJ305132 - - 2e+1 At5g13880 unknown protein S.X. H.G.
0.44 64.5 Ta.7238.2.S1_at CF182135 - - 7e+0 At3g06180 structural constituent of ribosome S.X. H.G.
0.43 62.2 TaAffx.119559.1.S1_at CF134309 - - 2e+0 At1g48200 unknown protein S.X. H.G.
0.41 59.6 Ta.12660.3.S1_a_at CA655158 - - 1e-15 At4g32850 nPAP (NUCLEAR POLY(A) POLYMERASE) S.X. H.G.
0.41 59.6 Ta.9551.2.S1_at BJ269344 - - 1e+0 At5g08410 FTRA2 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.4 99.3 GSM111241 genotype F82 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
10.0 99.1 GSM314277 tissue type: pistil, before anthesis - rep3 GSE12508 Transcription patterns during wheat development
7.8 98.7 GSM111194 genotype C25 developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
7.3 98.6 GSM298083 Crown tissue of Solstice at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
7.3 98.6 GSM314276 tissue type: pistil, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
6.7 98.4 GSM298084 Crown tissue of Solstice at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
6.2 98.1 GSM314275 tissue type: pistil, before anthesis - rep1 GSE12508 Transcription patterns during wheat development
5.9 98.0 GSM111185 genotype C22 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
5.9 98.0 GSM111248 genotype F87 developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
5.8 97.9 GSM138191 genotype D39 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-3 44 Ta.11108.1.S1_at BQ169395 - - 3e-5 At3g53235 unknown protein C.G. S.X.
0.04 4e-3 42 TaAffx.92145.1.S1_at BQ743274 - - 6e-3 At4g25720 QC (GLUTAMINYL CYCLASE) C.G. S.X.
0.04 4e-3 42 TaAffx.113320.1.S1_at CA615636 - - 2e-3 At3g18850 LPAT5 C.G. S.X.
0.04 4e-3 42 TaAffx.112935.1.S1_at CA619646 - - 5e-2 At3g53235 unknown protein C.G. S.X.
0.03 4e-3 42 Ta.8512.1.S1_at BQ162001 - - 7e+0 At2g28190 CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) C.G. S.X.
0.05 2e-2 40 TaAffx.93094.1.S1_at BJ232252 - - 4e+0 At2g27390 proline-rich family protein C.G. S.X.
0.03 2e-2 40 TaAffx.36903.1.S1_at BJ309081 - - 5e-4 At3g53235 unknown protein C.G. S.X.
0.06 2e-2 40 TaAffx.25599.1.S1_at CA697951 - - 3e-1 At5g44568 unknown protein C.G. S.X.
0.04 2e-2 40 TaAffx.13368.1.S1_at BG905316 - - 3e+0 At5g54850 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-3 44 Arabidopsis thaliana At3g53235 824490 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown - - - C.G. S.X.
0.04 6e-3 42 Glycine max GmaAffx.35191.1.S1_at BF070827 - - 4e+0 At4g02380 SAG21 (SENESCENCE-ASSOCIATED GENE 21) C.G. S.X.
0.04 8e-3 40 Hordeum vulgare Contig1697_s_at Contig1697 - - 1e-6 At5g46430 60S ribosomal protein L32 (RPL32B) C.G. S.X.
0.05 3e-5 50 Oryza sativa Os.51735.1.S1_s_at - - - 0 C.G. S.X.
0.06 4e-4 46 Populus trichocarpa PtpAffx.207592.1.S1_at pmrna15066 hypothetical protein - 3e+0 At5g14370 - C.G. S.X.
0.05 7e-2 36 Vitis vinifera 1617480_at CB342000 hypothetical protein LOC100260825 - 2e-2 At4g33660 unknown protein C.G. S.X.
0.05 7e-3 40 Zea mays Zm.6828.1.A1_at AI396546 - - 2e-1 At1g02710 glycine-rich protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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