Gene omics information

Query gene ID	TaAffx.92850.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	TaAffx.92850.1.S1_at	BJ245056	-	-	4e+0	At3g12830	auxin-responsive family protein	S.X.	H.G.	Please select
0.10	11.3	Ta.9772.2.S1_x_at	CA606107	-	-	4e-3	At4g29430	rps15ae (ribosomal protein S15A E)	S.X.	H.G.	Please select
0.10	11.3	Ta.4932.2.S1_a_at	CD883564	-	-	7e-32	At5g22330	RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1)	S.X.	H.G.	Please select
0.06	7.6	Ta.5793.2.S1_at	CK161475	-	-	6e-14	At5g55230	ATMAP65-1 (MICROTUBULE-ASSOCIATED PROTEINS 65-1)	S.X.	H.G.	Please select
0.03	4.7	Ta.4005.2.S1_s_at	CA592974	-	-	1e+0	At1g27435	unknown protein	S.X.	H.G.	Please select
0.01	2.4	Ta.4838.1.S1_a_at	BJ267506	-	-	5e+0	At3g21640	TWD1 (TWISTED DWARF 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
24.4	99.8	GSM314270	tissue type: immature inflorescence - rep2	GSE12508	Transcription patterns during wheat development
20.0	99.7	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
14.4	99.5	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
12.2	99.4	GSM314253	tissue type: germinating seed, coleoptile - rep3	GSE12508	Transcription patterns during wheat development
11.5	99.3	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
11.1	99.3	GSM298085	Crown tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
10.1	99.2	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
9.6	99.1	GSM138163	genotype E5 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
9.6	99.1	GSM314251	tissue type: germinating seed, coleoptile - rep1	GSE12508	Transcription patterns during wheat development
9.1	99.0	GSM314263	tissue type: seedling, crown - rep1	GSE12508	Transcription patterns during wheat development

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	2e-8	59	Ta.17932.1.S1_at	CA626041	-	-	2e+0	At2g24340	transcription factor	C.G.	S.X.	Please select
0.03	2e-2	40	TaAffx.64631.1.A1_at	BJ284527	-	-	5e+0	At5g24655	LSU4 (RESPONSE TO LOW SULFUR 4)	C.G.	S.X.	Please select
0.04	2e-2	40	TaAffx.37983.1.S1_at	BJ256371	-	-	1e+0	At3g60080	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.04	2e-2	40	TaAffx.37983.1.S1_x_at	BJ256371	-	-	1e+0	At3g60080	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.04	2e-2	40	TaAffx.19040.1.S1_at	CD929746	-	-	2e+0	At4g33660	unknown protein	C.G.	S.X.	Please select
0.04	2e-2	40	Ta.25046.1.S1_at	BJ267998	-	-	7e-2	At5g38800	AtbZIP43 (Arabidopsis thaliana basic leucine-zipper 43)	C.G.	S.X.	Please select
0.04	7e-2	38	TaAffx.92763.1.S1_at	BJ248622	-	-	4e+0	At2g22425	peptidase	C.G.	S.X.	Please select
0.04	7e-2	38	TaAffx.81496.1.S1_at	CA685342	-	-	1e-1	At1g26160	metal-dependent phosphohydrolase HD domain-containing protein	C.G.	S.X.	Please select
0.04	7e-2	38	TaAffx.66031.1.S1_at	BJ211234	-	-	1e+1	At5g34882	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At3g12830	820465	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e-2	40	Glycine max	Gma.11219.3.A1_s_at	BQ741865	-	-	2e-17	At1g15930	40S ribosomal protein S12 (RPS12A)	C.G.	S.X.	Please select
0.04	3e-2	38	Hordeum vulgare	Contig13088_at	Contig13088	-	-	3e+0	At4g12440	adenine phosphoribosyltransferase, putative	C.G.	S.X.	Please select
0.39	7e-56	218	Oryza sativa	Os04g0675600	9632.m05655	-	Protein prenyltransferase domain containingprotein	3e+0	At4g32340	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.30454.2.S1_at	CV275464	-	-	2e-1	At2g16620	protein kinase-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	8e-2	36	Vitis vinifera	1607533_at	CD801397	hypothetical protein LOC100263447	-	1e-5	At3g54670	TTN8 (TITAN8)	C.G.	S.X.	Please select
0.03	3e-2	38	Zea mays	Zm.9334.1.A1_at	BM268129	-	-	2e+1	At5g28642	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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