Gene omics information

Query gene ID	TaAffx.91428.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.3	TaAffx.91428.1.S1_at	BJ313181	-	-	3e+0	At4g21450	vesicle-associated membrane family protein / VAMP family protein	S.X.	H.G.	Please select
0.80	92.2	Ta.6965.1.S1_at	BJ313225	-	-	3e+0	At3g03847	auxin-responsive family protein	S.X.	H.G.	Please select
0.67	86.3	Ta.10650.1.A1_at	BQ166187	-	-	4e+0	At4g24026	unknown protein	S.X.	H.G.	Please select
0.67	86.3	TaAffx.16068.1.S1_at	BQ168935	-	-	1e+0	At1g33260	protein kinase family protein	S.X.	H.G.	Please select
0.57	79.2	Ta.14323.1.S1_at	BU100287	-	-	1e+1	At4g18593	dual specificity protein phosphatase-related	S.X.	H.G.	Please select
0.48	69.0	Ta.15859.1.S1_at	BJ310415	-	-	1e+0	At5g50070	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
24.7	99.8	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
18.7	99.7	GSM298073	Crown tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
18.5	99.7	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
17.0	99.6	GSM314270	tissue type: immature inflorescence - rep2	GSE12508	Transcription patterns during wheat development
15.6	99.6	GSM314271	tissue type: immature inflorescence - rep3	GSE12508	Transcription patterns during wheat development
15.4	99.6	GSM298074	Crown tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
13.5	99.5	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
13.0	99.4	GSM298059	Crown tissue of Harnesk at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
12.9	99.4	GSM314265	tissue type: seedling, crown - rep3	GSE12508	Transcription patterns during wheat development
12.2	99.4	GSM298062	Crown tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-3	42	TaAffx.25974.1.S1_at	CD878052	-	-	9e+0	At4g39540	shikimate kinase family protein	C.G.	S.X.	Please select
0.03	8e-1	34	TaAffx.79564.1.S1_at	BJ221572	-	-	2e+0	At4g05380	AAA-type ATPase family protein	C.G.	S.X.	Please select
0.02	8e-1	34	TaAffx.16192.1.S1_at	BQ169008	-	-	1e-8	At1g43160	RAP2.6 (related to AP2 6)	C.G.	S.X.	Please select
0.04	8e-1	34	Ta.11042.1.A1_at	BJ229566	-	-	1e-3	At4g33030	SQD1	C.G.	S.X.	Please select
0.01	3e+0	32	TaAffx.87642.1.S1_at	CA639148	-	-	3e-13	At2g47980	SCC3 (SISTER-CHROMATID COHESION PROTEIN 3)	C.G.	S.X.	Please select
0.02	3e+0	32	TaAffx.69962.1.S1_at	CA634743	-	-	4e-5	At3g03490	PEX19-1 (peroxin 19-1)	C.G.	S.X.	Please select
0.03	3e+0	32	TaAffx.121761.1.S1_at	CA731233	-	-	7e+0	At5g14670	ATARFA1B (ADP-ribosylation factor A1B)	C.G.	S.X.	Please select
0.03	3e+0	32	TaAffx.110973.1.S1_at	CA649435	-	-	4e+0	At1g52200	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	32	Ta.99.1.S1_x_at	CD866760	O-acetylserine (thiol) lyase	-	5e-18	At4g14880	OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At4g21450	826300	vesicle-associated membrane family protein / VAMP family protein	F:structural molecule activity;P:biological_process unknown;C:plasma membrane;MOFPBV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	7e-2	38	Glycine max	GmaAffx.16273.1.A1_at	CD402017	-	-	3e+0	At1g07985	Expressed protein	C.G.	S.X.	Please select
0.04	4e-1	34	Hordeum vulgare	HR01L10r_at	HR01L10r	-	-	2e-1	At3g55880	unknown protein	C.G.	S.X.	Please select
0.25	7e-9	61	Oryza sativa	Os.50954.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e+0	32	Populus trichocarpa	PtpAffx.29063.1.A1_at	DN490406	-	-	7e-1	At5g18300	anac088 (Arabidopsis NAC domain containing protein 88)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e-1	34	Vitis vinifera	1618876_at	CA816946	-	-	4e+0	At2g21130	peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP2) / rotamase	C.G.	S.X.	Please select
0.04	3e-1	34	Zea mays	Zm.4271.5.S1_x_at	AI881217	Hypothetical protein LOC100191665	-	2e+1	At3g55470	C2 domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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