Gene omics information

Query gene ID	TaAffx.87003.1.S1_s_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	TaAffx.87003.1.S1_s_at	CA597427	-	-	4e-3	At4g19150	ankyrin repeat family protein	S.X.	H.G.	Please select
0.67	86.3	Ta.7506.2.S1_a_at	BJ267303	-	-	5e-15	At1g27650	ATU2AF35A	S.X.	H.G.	Please select
0.40	58.4	Ta.5355.1.S1_at	BJ286607	-	-	2e+0	At5g55565	-	S.X.	H.G.	Please select
0.36	51.9	Ta.8142.1.S1_at	BQ752849	-	-	3e-15	At1g61620	phosphoinositide binding	S.X.	H.G.	Please select
0.36	51.9	Ta.2207.2.S1_a_at	CA612248	-	-	5e-25	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	S.X.	H.G.	Please select
0.16	18.2	Ta.536.1.S1_at	BE605196	-	-	8e+0	At5g35735	auxin-responsive family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.3	98.2	GSM298073	Crown tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.1	98.1	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.9	98.0	GSM298064	Crown tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.5	97.8	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.6	97.0	GSM298074	Crown tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM298071	Crown tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.3	96.7	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.1	96.4	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.9	96.1	GSM298062	Crown tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM138169	genotype B68 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.54	0	654	Ta.5355.1.S1_at	BJ286607	-	-	2e+0	At5g55565	-	C.G.	S.X.	Please select
0.06	2e-11	69	TaAffx.87283.1.S1_at	CA593032	-	-	5e+0	At5g57640	-	C.G.	S.X.	Please select
0.04	2e-11	69	Ta.27982.1.S1_at	CK159437	-	-	5e-1	At1g61575	unknown protein	C.G.	S.X.	Please select
0.06	8e-11	67	TaAffx.51288.1.S1_at	CA728019	-	-	4e+0	At1g24200	paired amphipathic helix repeat-containing protein	C.G.	S.X.	Please select
0.06	3e-10	65	TaAffx.87188.1.S1_at	CA594329	-	-	4e+0	At3g46470	nucleic acid binding / nucleotide binding	C.G.	S.X.	Please select
0.06	3e-10	65	TaAffx.32316.1.S1_at	CA597058	-	-	2e+1	At3g17998	CPuORF30 (Conserved peptide upstream open reading frame 30)	C.G.	S.X.	Please select
0.06	3e-10	65	TaAffx.114181.1.S1_at	CA597251	-	-	4e+0	At5g01080	beta-galactosidase	C.G.	S.X.	Please select
0.05	3e-10	65	Ta.9946.1.A1_at	CD490586	-	-	7e+0	At1g06240	unknown protein	C.G.	S.X.	Please select
0.06	3e-10	65	Ta.15851.1.S1_at	CA498677	-	-	1e+0	At5g66350	SHI (SHORT INTERNODES)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	4e-3	42	Arabidopsis thaliana	At4g19150	827653	ankyrin repeat family protein	F:protein binding;P:biological_process unknown;C:unknown;MOFBPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	2e-9	63	Glycine max	GmaAffx.83175.1.S1_at	BQ611010	-	-	2e+0	At5g50740	metal ion binding	C.G.	S.X.	Please select
0.51	3e-175	613	Hordeum vulgare	Contig10124_at	Contig10124	-	-	1e-1	At2g32765	SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5)	C.G.	S.X.	Please select
0.42	5e-75	282	Oryza sativa	Os10g0580700	AB110173.1	-	Ankyrin repeat containing protein	2e-4	At4g19150	ankyrin repeat family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e-9	63	Populus trichocarpa	Ptp.7924.1.S1_at	DN502515	-	-	1e+0	At1g32520	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	5e-6	50	Vitis vinifera	1617182_at	CB921793	-	-	5e-3	At1g62240	unknown protein	C.G.	S.X.	Please select
0.35	1e-75	282	Zea mays	Zm.10048.1.S1_at	CB815833	-	-	9e-3	At4g19150	ankyrin repeat family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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