Gene omics information

Query gene ID TaAffx.86092.1.S1_at
Gene name
Organism Triticum aestivum


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9198.2TaAffx.86092.1.S1_atCA616812--3e-10At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)S.X.H.G.
0.2024.0Ta.19108.1.A1_atBQ168700--1e+0At3g11780MD-2-related lipid recognition domain-containing protein / ML domain-containing proteinS.X.H.G.
0.056.7Ta.26480.1.A1_atCD490991--6e-12At5g43330malate dehydrogenase, cytosolic, putativeS.X.H.G.
0.034.7TaAffx.84292.1.S1_atCA640524--2e+0At4g05070unknown proteinS.X.H.G.
0.023.6Ta.20191.1.S1_x_atCA673329--9e-8At1g04170EIF2 GAMMAS.X.H.G.
0.000.7Ta.16668.1.S1_x_atCK212492--2e+0At3g54826-S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
10.599.2GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivars
10.299.2GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.798.4GSM111224genotype A81 developing seed at 5 days after anthesis, biological rep1GSE4935wheat expression level polymorphism study 39 genotypes 2 biological reps
5.797.9GSM298075Crown tissue of Paragon at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivars
5.197.5GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.097.4GSM138200genotype F48 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.996.1GSM250914Tc_7dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.896.0GSM138153genotype G32 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.695.6GSM138162genotype E5 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.595.4GSM298072Crown tissue of Paragon at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivars
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.271e-114412Ta.9393.2.S1_s_atCD933620--5e-24At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
0.269e-57220Ta.9393.1.S1_a_atCA640600--4e-1At1g23820SPDS1 (spermidine synthase 1)C.G.S.X.
0.269e-57220Ta.9393.1.S1_atCA640600--4e-1At1g23820SPDS1 (spermidine synthase 1)C.G.S.X.
0.151e-37157Ta.7196.1.S1_atCK155443--6e-2At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
0.023e-136Ta.11949.1.A1_atBQ171132--6e-1At2g31940unknown proteinC.G.S.X.
0.031e+034TaAffx.16182.1.A1_atBG607174--8e-2At2g40380PRA1.B2 (PRENYLATED RAB ACCEPTOR 1.B2)C.G.S.X.
0.021e+034Ta.1697.1.S1_atCD895912--6e-19At4g14342pre-mRNA splicing factor 10 kDa subunit, putativeC.G.S.X.
0.021e+034Ta.1697.1.S1_a_atCD895912--6e-19At4g14342pre-mRNA splicing factor 10 kDa subunit, putativeC.G.S.X.
0.034e+032TaAffx.58211.1.S1_atCA621436--2e-5At4g40040histone H3.2C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.123e-1065Arabidopsis thalianaAt5g53120835392SPDS3 (SPERMIDINE SYNTHASE 3)encodes a novel spermine synthase and is a paralog of previously characterized spermidine synthases, SPDS1 and SPDS2. SPDS3 forms heterodimers with SDPS2, which in turn forms heterodimers with SDPS1 in vivo. The gene does not complement speDelta3 deficiency of spermidine synthase in yeast but DOES complement speDelta4 deficiency.---C.G.S.X.
0.076e-342Glycine maxGmaAffx.87908.1.S1_atBM270150--2e-23At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
0.322e-120430Hordeum vulgareContig1210_atContig1210--2e-16At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
0.273e-76286Oryza sativaOs06g0528600AB098063.1-Spermidine synthase 1 (EC 2.5.1.16) (Putrescineaminopropyltransferase 1) (SPDSY 1)1e-8At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
0.104e-446Populus trichocarpaPtpAffx.89950.1.S1_atCK318312hypothetical protein-6e-63At1g70310SPDS2 (spermidine synthase 2)C.G.S.X.
0.071e-961Vitis vinifera1619220_atCA816725hypothetical protein LOC100257112-3e-89At1g23820SPDS1 (spermidine synthase 1)C.G.S.X.
0.476e-133472Zea maysZm.4248.1.A1_atAY110118.1hypothetical protein LOC100279222-6e-7At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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