CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID TaAffx.85981.2.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.64 83.6 TaAffx.85981.2.S1_at CA625845 - - 1e-56 At1g75630 AVA-P4 S.X. H.G.
0.61 82.0 Ta.5681.1.S1_x_at CA605111 - - 1e-4 At2g41420 proline-rich family protein S.X. H.G.
0.57 79.2 Ta.3083.2.A1_at BJ254365 - - 4e+0 At3g05602 unknown protein S.X. H.G.
0.44 64.5 TaAffx.38268.1.A1_at BJ242361 - - 1e+0 At1g21326 VQ motif-containing protein S.X. H.G.
0.41 59.6 TaAffx.106823.1.S1_x_at CA710938 - - 4e+0 At5g55570 unknown protein S.X. H.G.
0.40 58.4 Ta.14479.3.S1_x_at CA630294 - - 7e-18 At2g05830 eukaryotic translation initiation factor 2B family protein / eIF-2B family protein S.X. H.G.
0.36 51.9 Ta.3478.3.S1_x_at CA637826 - - 2e-11 At1g69670 CUL3B (CULLIN 3B) S.X. H.G.
0.36 51.9 Ta.2138.2.S1_at CA632124 - - 1e+0 At1g55840 SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein S.X. H.G.
0.34 48.1 Ta.3607.2.S1_at CA695720 - - 7e-5 At5g27430 signal peptidase subunit family protein S.X. H.G.
0.33 46.9 TaAffx.30610.1.S1_at CA623663 - - 1e+1 At5g60890 MYB34 (MYB DOMAIN PROTEIN 34) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
20.8 99.7 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
9.5 99.1 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
7.5 98.6 GSM111233 genotype H8 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
7.1 98.5 GSM298069 Leaf tissue of Paragon at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.1 96.4 GSM314285 tissue type: 22 DAP embryo - rep2 GSE12508 Transcription patterns during wheat development
3.6 95.6 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.2 94.8 GSM246384 SB165_Stem_ rep1_at anthesis GSE9767 Genotypic differences in water soluble carbohydrate metabolism in stem
3.0 94.3 GSM250889 Tc_3dpi_mock_rep2 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.0 94.3 GSM298079 Leaf tissue of Solstice at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
2.9 94.0 GSM246391 SB62_Stem_ rep2_at anthesis GSE9767 Genotypic differences in water soluble carbohydrate metabolism in stem
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.48 2e-145 515 Ta.23895.1.S1_at CK205337 - - 3e-55 At4g34720 AVA-P1 C.G. S.X.
0.48 2e-145 515 Ta.23895.1.S1_x_at CK205337 - - 3e-55 At4g34720 AVA-P1 C.G. S.X.
0.47 9e-144 510 Ta.28372.1.S1_a_at BJ250421 Vacuolar ATPase subunit c - 1e-48 At4g38920 ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3) C.G. S.X.
0.62 1e-136 486 TaAffx.85981.4.S1_at CA626243 - - 2e-60 At4g38920 ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3) C.G. S.X.
0.39 2e-80 299 TaAffx.85981.3.S1_s_at CA625807 - - 5e-21 At4g38920 ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3) C.G. S.X.
0.32 1e-72 274 TaAffx.113137.1.S1_at CA618265 - - 5e-15 At4g38920 ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3) C.G. S.X.
0.12 1e-47 190 Ta.28400.1.S1_at CK160320 - - 2e-13 At1g33230 - C.G. S.X.
0.12 1e-47 190 Ta.28400.1.S1_x_at CK160320 - - 2e-13 At1g33230 - C.G. S.X.
0.25 7e-46 184 TaAffx.85981.1.S1_at CA617852 - - 9e-20 At4g38920 ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.59 1e-56 220 Arabidopsis thaliana At1g75630 843898 AVA-P4 vacuolar H+-pumping ATPase 16 kD proteolipid (ava-p) mRNA, - - - C.G. S.X.
0.51 4e-45 182 Glycine max GmaAffx.92173.1.S1_s_at CF807898 - - 6e-86 At4g34720 AVA-P1 C.G. S.X.
0.54 1e-165 581 Hordeum vulgare Contig2159_at Contig2159 - - 7e-68 At1g75630 AVA-P4 C.G. S.X.
0.51 2e-99 363 Oryza sativa Os05g0106100 AK063178.1 - Vacuolar ATP synthase 16 kDa proteolipid subunit(EC 3.6.3.14) 1e-38 At1g19910 AVA-P2 C.G. S.X.
0.46 6e-44 178 Populus trichocarpa PtpAffx.5430.3.S1_a_at CV242643 hypothetical protein - 1e-112 At1g19910 AVA-P2 C.G. S.X.
0.44 2e-43 174 Vitis vinifera 1606789_at CF415022 similar to vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5) - 7e-83 At4g34720 AVA-P1 C.G. S.X.
0.69 0 1078 Zea mays Zm.19145.1.A1_at CA404085 ATPase1 - 2e-59 At1g75630 AVA-P4 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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