Gene omics information

Query gene ID	TaAffx.85934.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.64	83.6	TaAffx.85934.1.S1_at	CA618342	-	-	2e+1	At4g28564	unknown protein	S.X.	H.G.	Please select
0.30	40.9	TaAffx.19275.2.S1_at	CA677479	-	-	1e+0	At3g06390	integral membrane family protein	S.X.	H.G.	Please select
0.30	40.9	Ta.6594.2.S1_at	CA660418	-	-	4e+0	At1g25300	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein	S.X.	H.G.	Please select
0.27	35.6	Ta.10343.3.S1_at	CA598392	-	-	4e+0	At2g39010	PIP2E (PLASMA MEMBRANE INTRINSIC PROTEIN 2E)	S.X.	H.G.	Please select
0.26	33.6	TaAffx.27421.1.S1_at	CA676955	-	-	4e+0	At5g61590	AP2 domain-containing transcription factor family protein	S.X.	H.G.	Please select
0.24	30.3	Ta.7193.2.S1_at	BG904530	-	-	3e+0	At2g34690	ACD11 (ACCELERATED CELL DEATH 11)	S.X.	H.G.	Please select
0.23	29.0	Ta.30655.1.A1_at	BJ315986	ibZm protein	-	1e+0	At2g20450	60S ribosomal protein L14 (RPL14A)	S.X.	H.G.	Please select
0.19	22.4	TaAffx.113218.1.S1_at	CA617187	-	-	5e-3	At5g42050	-	S.X.	H.G.	Please select
0.18	21.0	TaAffx.54172.1.S1_at	CA684890	-	-	2e+1	At3g47980	integral membrane HPP family protein	S.X.	H.G.	Please select
0.14	15.8	TaAffx.99206.1.S1_at	CA727631	-	-	3e-1	At4g21610	LOL2 (LSD ONE LIKE 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.4	99.6	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
9.5	99.1	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
7.2	98.5	GSM143525	Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
7.1	98.5	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.9	98.4	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.9	98.0	GSM298089	Leaf tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.6	97.8	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.5	97.8	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8	97.2	GSM143513	Thatcher_Lr34 (resistant), mock inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.6	97.0	GSM143523	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-1	36	TaAffx.57720.1.S1_at	CA625617	-	-	5e+0	At5g65390	AGP7	C.G.	S.X.	Please select
0.02	2e+0	32	Ta.99.1.S1_x_at	CD866760	O-acetylserine (thiol) lyase	-	5e-18	At4g14880	OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)	C.G.	S.X.	Please select
0.02	2e+0	32	Ta.99.1.S1_at	CD866760	O-acetylserine (thiol) lyase	-	5e-18	At4g14880	OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)	C.G.	S.X.	Please select
0.03	6e+0	30	Ta.9308.3.A1_at	CD452871	-	-	1e-1	At1g63522	-	C.G.	S.X.	Please select
0.02	6e+0	30	Ta.9308.1.S1_at	CK211929	-	-	4e-5	At1g01820	PEX11C (PEROXIN 11C)	C.G.	S.X.	Please select
0.02	6e+0	30	Ta.9308.2.S1_a_at	BE411983	-	-	2e+0	At3g61070	PEX11E	C.G.	S.X.	Please select
0.02	6e+0	30	Ta.9308.2.S1_x_at	BE411983	-	-	2e+0	At3g61070	PEX11E	C.G.	S.X.	Please select
0.02	6e+0	30	Ta.9308.1.S1_x_at	CK211929	-	-	4e-5	At1g01820	PEX11C (PEROXIN 11C)	C.G.	S.X.	Please select
0.03	6e+0	30	Ta.2392.1.S1_x_at	CA623973	-	-	2e+0	At3g07450	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	2e+1	28	Arabidopsis thaliana	At4g28564	6241446	unknown protein	F:unknown;P:unknown;C:unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	3e+1	28	Glycine max	PsAffx.psMA007xG15f_s_at	PsAffx.psMA007xG15f	-	-	6e-1	At1g31860	AT-IE	C.G.	S.X.	Please select
0.05	1e+1	28	Hordeum vulgare	Contig6752_s_at	Contig6752	-	-	4e+0	At2g33845	DNA-binding protein-related	C.G.	S.X.	Please select
0.06	1e+1	30	Oryza sativa	OsAffx.31154.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	8e+0	30	Populus trichocarpa	PtpAffx.23380.4.A1_at	CV278034	hypothetical protein	-	2e+0	At2g24765	ARF3 (ADP-RIBOSYLATION FACTOR 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e+0	30	Vitis vinifera	1616628_at	CK136902.1	hypothetical protein LOC100258493	-	4e-3	At2g02060	transcription factor	C.G.	S.X.	Please select
0.17	3e-9	59	Zea mays	Zm.1011.1.S1_at	BM073180	hypothetical protein LOC100192700	-	3e+0	At1g35242	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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