Gene omics information

Query gene ID	TaAffx.85758.2.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.98	99.9	TaAffx.85758.2.S1_at	CA625550	-	-	1e-15	At1g22450	COX6B (CYTOCHROME C OXIDASE 6B)	S.X.	H.G.	Please select
0.24	30.3	Ta.2592.2.S1_s_at	CD874103	-	-	6e+0	At4g19270	unknown protein	S.X.	H.G.	Please select
0.22	27.1	Ta.28783.1.S1_x_at	U32310.1	single-stranded nucleic acid binding protein	-	5e-4	At4g39260	GR-RBP8	S.X.	H.G.	Please select
0.19	22.4	Ta.6335.1.S1_at	AJ612925	-	-	3e+0	At3g59680	unknown protein	S.X.	H.G.	Please select
0.16	18.2	Ta.1078.2.S1_a_at	BJ252383	Cyclophilin	-	8e-6	At4g38740	ROC1 (ROTAMASE CYP 1)	S.X.	H.G.	Please select
0.14	15.8	Ta.28350.1.S1_a_at	CK171662	14-3-3 protein	-	3e-28	At3g02520	GRF7 (GENERAL REGULATORY FACTOR 7)	S.X.	H.G.	Please select
0.12	13.3	Ta.659.4.S1_a_at	CD878208	-	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	S.X.	H.G.	Please select
0.11	12.4	TaAffx.12787.1.S1_at	BJ234282	-	-	4e+0	At3g16670	unknown protein	S.X.	H.G.	Please select
0.10	11.3	TaAffx.51434.1.S1_at	CA725005	-	-	1e+1	At5g28919	-	S.X.	H.G.	Please select
0.10	11.3	Ta.25306.1.S1_at	CK153489	-	-	2e-1	At5g47210	nuclear RNA-binding protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
36.1	99.9	GSM111208	genotype F36 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
21.9	99.8	GSM111209	genotype F36 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
21.7	99.8	GSM111221	genotype H23 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
18.2	99.7	GSM143493	Jupateco_Lr34 (resistant), mock inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
13.2	99.5	GSM139931	Anther maturea nthers rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
11.4	99.3	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
11.3	99.3	GSM111237	genotype F38b developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
10.5	99.2	GSM143497	Jupateco_Lr34 (susceptible), mock inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
9.5	99.1	GSM298085	Crown tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
8.3	98.8	GSM298063	Crown tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.67	1e-98	359	TaAffx.85758.1.S1_at	CA619882	-	-	1e+0	At4g28060	cytochrome c oxidase subunit 6b, putative	C.G.	S.X.	Please select
0.22	2e-29	129	Ta.9798.1.S1_at	AY123416.1	-	-	1e-26	At1g22450	COX6B (CYTOCHROME C OXIDASE 6B)	C.G.	S.X.	Please select
0.04	3e-1	36	TaAffx.85118.1.S1_at	CA625438	-	-	4e+0	At2g27580	zinc finger (AN1-like) family protein	C.G.	S.X.	Please select
0.05	3e-1	36	Ta.2340.1.S1_at	BF200129	-	-	2e-5	At5g57815	cytochrome c oxidase subunit 6b, putative	C.G.	S.X.	Please select
0.05	3e-1	36	Ta.22867.1.S1_at	CK208259	-	-	2e-11	At5g57815	cytochrome c oxidase subunit 6b, putative	C.G.	S.X.	Please select
0.02	1e+0	34	Ta.25584.1.S1_at	CD454169	-	-	4e-21	At2g21790	RNR1 (RIBONUCLEOTIDE REDUCTASE 1)	C.G.	S.X.	Please select
0.02	1e+0	34	Ta.18152.2.S1_at	BQ803082	-	-	2e+0	At4g26965	NADH:ubiquinone oxidoreductase family protein	C.G.	S.X.	Please select
0.03	1e+0	34	Ta.10235.1.S1_at	BJ246114	-	-	2e-2	At5g24390	RabGAP/TBC domain-containing protein	C.G.	S.X.	Please select
0.03	4e+0	32	TaAffx.97938.1.A1_at	BJ276127	-	-	1e+0	At2g47710	universal stress protein (USP) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	1e-15	83	Arabidopsis thaliana	At1g22450	838851	COX6B (CYTOCHROME C OXIDASE 6B)	subunit 6b of cytochrome c oxidase	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	6e-12	71	Glycine max	Gma.5797.1.S1_at	BM523730	-	-	6e-28	At1g22450	COX6B (CYTOCHROME C OXIDASE 6B)	C.G.	S.X.	Please select
0.27	4e-32	137	Hordeum vulgare	Contig3203_at	Contig3203	-	-	1e-35	At1g22450	COX6B (CYTOCHROME C OXIDASE 6B)	C.G.	S.X.	Please select
0.30	5e-44	178	Oryza sativa	Os03g0390400	AB025187.1	-	Cytochrome c oxidase subunit 6b (OSJNBa0029H02.1protein) (OSJNBa0067K08.22 protein)	7e-37	At1g22450	COX6B (CYTOCHROME C OXIDASE 6B)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	6e-6	52	Populus trichocarpa	PtpAffx.31378.1.A1_s_at	CV279321	hypothetical protein	-	1e-19	At1g22450	COX6B (CYTOCHROME C OXIDASE 6B)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.08	2e-2	38	Vitis vinifera	1615852_a_at	CA816288	hypothetical protein LOC100241670 /// hypothetical protein LOC100263948	-	8e-8	At1g22450	COX6B (CYTOCHROME C OXIDASE 6B)	C.G.	S.X.	Please select
0.57	1e-109	395	Zea mays	Zm.2825.4.A1_at	CF011665	hypothetical protein LOC100192808	-	6e-41	At1g22450	COX6B (CYTOCHROME C OXIDASE 6B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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