CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID TaAffx.85715.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.2 TaAffx.85715.1.S1_at CA620238 - - 4e-11 At5g02960 40S ribosomal protein S23 (RPS23B) S.X. H.G.
0.27 35.6 TaAffx.104803.1.S1_at CA744603 - - 9e-1 At4g36420 ribosomal protein L12 family protein S.X. H.G.
0.13 14.6 Ta.20867.1.S1_x_at CA616660 - - 1e-15 At1g09200 histone H3 S.X. H.G.
0.07 8.6 TaAffx.12644.1.S1_x_at BJ247681 - - 4e-1 At1g18800 NRP2 (NAP1-RELATED PROTEIN 2) S.X. H.G.
0.01 2.4 TaAffx.7371.1.S1_at CA660740 - - 4e-6 At2g28305 unknown protein S.X. H.G.
0.00 0.7 Ta.20889.2.S1_at CA628237 - - 2e-1 At1g11500 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
71.3 100.0 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
12.2 99.4 GSM298057 Leaf tissue of Harnesk at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
7.7 98.7 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
7.5 98.6 GSM138207 genotype B11 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
7.1 98.5 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
7.0 98.5 GSM143520 Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.6 97.8 GSM298053 Leaf tissue of Harnesk at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
5.5 97.8 GSM143505 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.3 97.6 GSM111208 genotype F36 developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
4.9 97.3 GSM143494 Jupateco_Lr34 (resistant), mock inoculated distal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 6e-29 127 Ta.1335.1.S1_x_at BQ842066 - - 4e-85 At5g02960 40S ribosomal protein S23 (RPS23B) C.G. S.X.
0.12 6e-29 127 Ta.1335.1.S1_at BQ842066 - - 4e-85 At5g02960 40S ribosomal protein S23 (RPS23B) C.G. S.X.
0.13 1e-14 79 Ta.19321.1.S1_at CD871367 - - 7e-49 At5g02960 40S ribosomal protein S23 (RPS23B) C.G. S.X.
0.12 2e-13 75 Ta.1335.2.S1_x_at CD454702 - - 2e-86 At5g02960 40S ribosomal protein S23 (RPS23B) C.G. S.X.
0.12 2e-13 75 Ta.1335.2.S1_at CD454702 - - 2e-86 At5g02960 40S ribosomal protein S23 (RPS23B) C.G. S.X.
0.09 7e-7 54 Ta.12191.3.S1_at CA600958 - - 4e-3 At5g02960 40S ribosomal protein S23 (RPS23B) C.G. S.X.
0.04 2e-1 36 TaAffx.123156.1.S1_at CA679382 - - 1e+0 At2g44745 WRKY family transcription factor C.G. S.X.
0.04 6e-1 34 TaAffx.31703.1.S1_at CA609601 - - 4e+0 At2g36410 unknown protein C.G. S.X.
0.05 6e-1 34 Ta.5690.1.S1_at BJ287831 - - 3e+0 At4g36900 RAP2.10 (related to AP2 10) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 4e-11 67 Arabidopsis thaliana At5g02960 831724 40S ribosomal protein S23 (RPS23B) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome;BOPMFA - - - C.G. S.X.
0.17 9e-7 54 Glycine max HgAffx.17827.1.S1_at CB374329 - - 6e-30 At5g02960 40S ribosomal protein S23 (RPS23B) C.G. S.X.
0.17 1e-22 105 Hordeum vulgare Contig2094_s_at Contig2094 - - 3e-100 At5g02960 40S ribosomal protein S23 (RPS23B) C.G. S.X.
0.26 9e-17 87 Oryza sativa OsAffx.30469.1.S1_x_at - - - 0 C.G. S.X.
0.16 1e-18 93 Populus trichocarpa Ptp.1414.1.S1_at CV229232 hypothetical protein - 3e-97 At3g09680 40S ribosomal protein S23 (RPS23A) C.G. S.X.
0.20 1e-11 67 Vitis vinifera 1612547_at CF413796 - - 5e-27 At3g09680 40S ribosomal protein S23 (RPS23A) C.G. S.X.
0.52 1e-163 573 Zea mays Zm.16311.2.S1_at BE575048 hypothetical protein LOC100192600 - 5e-93 At5g02960 40S ribosomal protein S23 (RPS23B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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