Gene omics information

Query gene ID	TaAffx.8564.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.90	94.8	TaAffx.8564.1.S1_at	CA623409	-	-	4e+0	At5g02220	unknown protein	S.X.	H.G.	Please select
0.30	40.9	TaAffx.29371.1.S1_at	CA644147	-	-	4e+0	At5g18310	unknown protein	S.X.	H.G.	Please select
0.29	39.2	TaAffx.77776.1.S1_at	CA743024	-	-	2e+0	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	S.X.	H.G.	Please select
0.28	39.2	Ta.26942.1.S1_at	CD491274	-	-	8e-46	At5g59300	UBC7 (UBIQUITIN CARRIER PROTEIN 7)	S.X.	H.G.	Please select
0.21	25.5	TaAffx.51397.1.S1_at	CA725473	-	-	4e-49	At1g23490	ATARF1 (ADP-RIBOSYLATION FACTOR 1)	S.X.	H.G.	Please select
0.14	15.8	TaAffx.55653.1.S1_at	CA663094	-	-	1e+1	At4g20030	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.14	15.8	TaAffx.85023.1.S1_at	CA626261	-	-	4e+0	At4g24740	AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2)	S.X.	H.G.	Please select
0.13	14.6	TaAffx.65462.1.S1_at	BJ245082	-	-	9e-1	At3g18300	unknown protein	S.X.	H.G.	Please select
0.13	14.6	TaAffx.25411.1.S1_at	CA700489	-	-	4e+0	At4g35320	unknown protein	S.X.	H.G.	Please select
0.07	8.6	TaAffx.5596.1.S1_at	CA705635	-	-	3e+0	At1g12250	thylakoid lumenal protein-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.8	99.8	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
19.9	99.7	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
15.2	99.6	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
13.9	99.5	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.7	98.4	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.6	98.3	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.9	98.0	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.8	97.9	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.2	97.5	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8	97.2	GSM138171	genotype C31 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	TaAffx.88904.1.S1_x_at	BE515367	-	-	1e+0	At4g00460	Rho guanyl-nucleotide exchange factor	C.G.	S.X.	Please select
0.03	3e-1	36	TaAffx.83115.1.S1_at	CA661761	-	-	1e+0	At1g75110	RRA2 (REDUCED RESIDUAL ARABINOSE 2)	C.G.	S.X.	Please select
0.03	1e+0	34	TaAffx.78545.5.S1_x_at	CA698524	WRKY39 transcription factor	-	1e+0	At2g28760	NAD-dependent epimerase/dehydratase family protein	C.G.	S.X.	Please select
0.02	1e+0	34	TaAffx.78545.1.S1_s_at	CK161752	-	-	2e-1	At1g06475	unknown protein	C.G.	S.X.	Please select
0.05	1e+0	34	TaAffx.59206.1.S1_x_at	CA606315	-	-	3e+0	At3g01260	aldose 1-epimerase/ carbohydrate binding / catalytic/ isomerase	C.G.	S.X.	Please select
0.05	1e+0	34	TaAffx.59206.1.S1_at	CA606315	-	-	3e+0	At3g01260	aldose 1-epimerase/ carbohydrate binding / catalytic/ isomerase	C.G.	S.X.	Please select
0.03	1e+0	34	TaAffx.39149.1.S1_at	BJ281803	-	-	1e+0	At4g00220	JLO (JAGGED LATERAL ORGANS)	C.G.	S.X.	Please select
0.03	1e+0	34	TaAffx.12120.1.S1_at	BJ292177	-	-	1e+0	At5g51650	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	34	Ta.9409.1.S1_at	BQ838824	-	-	4e+0	At1g70120	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e+0	32	Arabidopsis thaliana	At5g02220	831792	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	4e-1	36	Glycine max	PsAffx.C95000049_at	PsAffx.C95000049	-	-	9e+0	At1g07950	surfeit locus protein 5 family protein / SURF5 family protein	C.G.	S.X.	Please select
0.24	9e-12	69	Hordeum vulgare	Contig13915_at	Contig13915	-	-	7e-2	At5g13850	NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3)	C.G.	S.X.	Please select
0.20	1e-14	81	Oryza sativa	Os03g0595200	NM_184956.1	-	Conserved hypothetical protein	3e-1	At3g51750	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.213058.1.S1_at	pmrna25552	hypothetical protein	-	8e-1	At5g39650	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	32	Vitis vinifera	1617772_at	AY427082.1	-	-	2e-2	At1g72890	disease resistance protein (TIR-NBS class), putative	C.G.	S.X.	Please select
0.51	7e-148	521	Zea mays	Zm.3183.1.A1_at	CF634309	hypothetical protein LOC100274988	-	7e+0	At5g55640	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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