Gene omics information

Query gene ID	TaAffx.85343.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	93.4	TaAffx.85343.1.S1_at	CA623566	-	-	4e+0	At5g34828	-	S.X.	H.G.	Please select
0.60	81.0	TaAffx.24121.1.S1_at	CA724779	-	-	2e-1	At1g11590	pectin methylesterase, putative	S.X.	H.G.	Please select
0.60	81.0	TaAffx.87138.1.S1_at	CA595147	-	-	4e+0	At5g01880	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.60	81.0	TaAffx.109025.3.S1_at	CA702122	-	-	2e-1	At1g08790	unknown protein	S.X.	H.G.	Please select
0.50	72.4	TaAffx.132656.2.S1_at	CA600729	-	-	1e+0	At1g76500	SOB3 (SUPPRESSOR OF PHYB-4#3)	S.X.	H.G.	Please select
0.35	49.8	Ta.21581.1.S1_at	CA696527	-	-	4e+0	At2g36460	fructose-bisphosphate aldolase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.5	99.7	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
20.4	99.7	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
17.8	99.7	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
12.5	99.4	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
11.1	99.3	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
9.6	99.1	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.6	98.7	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
7.3	98.6	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.9	98.4	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.3	95.0	GSM298073	Crown tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	2e-5	50	Ta.25819.1.A1_at	CD374079	-	-	4e-1	At2g35090	unknown protein	C.G.	S.X.	Please select
0.04	3e-1	36	TaAffx.109026.1.S1_at	CA663686	-	-	9e-1	At4g35165	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	36	Ta.24307.1.A1_at	AL822297	cytokinin dehydrogenase	-	1e+0	At2g03570	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	36	Ta.24307.1.S1_at	AL822297	cytokinin dehydrogenase	-	1e+0	At2g03570	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	34	TaAffx.75800.1.S1_at	CA700568	-	-	3e-7	At2g18390	TTN5 (TITAN 5)	C.G.	S.X.	Please select
0.04	1e+0	34	TaAffx.120373.1.A1_at	BJ227697	-	-	6e-1	At3g28455	CLE25 (CLAVATA3/ESR-RELATED 25)	C.G.	S.X.	Please select
0.03	1e+0	34	TaAffx.110321.1.S1_at	CA660449	-	-	2e-1	At1g62240	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	34	TaAffx.106507.1.S1_at	CA717197	-	-	2e-1	At5g33390	glycine-rich protein	C.G.	S.X.	Please select
0.01	1e+0	34	Ta.9561.2.S1_a_at	CK196502	-	-	9e-1	At4g19865	kelch repeat-containing F-box family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e+0	32	Arabidopsis thaliana	At5g34828	5008236	-	Encodes a Plant thionin family protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	HgAffx.16833.1.S1_at	CB279523	-	-	4e+0	At4g17420	-	C.G.	S.X.	Please select
0.06	3e-2	38	Hordeum vulgare	EBro02_SQ007_D04_at	EBro02_SQ007_D04	-	-	3e+0	At4g05170	DNA binding / transcription factor	C.G.	S.X.	Please select
0.16	1e-32	141	Oryza sativa	Os.11054.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	6e+0	32	Populus trichocarpa	PtpAffx.208011.1.S1_at	pmrna15904	hypothetical protein	-	1e+0	At1g77480	nucellin protein, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e+0	30	Vitis vinifera	1622604_s_at	CF608398	-	-	1e+0	At4g18660	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	36	Zea mays	Zm.17679.1.A1_at	CK369820	-	-	3e-1	At4g18070	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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