Gene omics information

Query gene ID TaAffx.8533.2.S1_at
Gene name
Organism Triticum aestivum


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9198.2TaAffx.8533.2.S1_atCA627108--4e-3At3g212304CL5 (4-coumarate:CoA ligase 5)S.X.H.G.
0.4464.5Ta.28579.2.S1_atCA611367--4e+0At5g67580TRB2S.X.H.G.
0.4058.4TaAffx.13785.2.S1_atCA708591--7e-8At2g34690ACD11 (ACCELERATED CELL DEATH 11)S.X.H.G.
0.3651.9Ta.19361.2.S1_atCA650802--5e-15At4g12650-S.X.H.G.
0.034.7TaAffx.57555.1.S1_atCA618738--2e+1At5g67600unknown proteinS.X.H.G.
0.012.4TaAffx.110167.1.S1_atCA662870--4e+0At4g14440HCD1 (3-HYDROXYACYL-COA DEHYDRATASE 1)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
38.699.9GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivars
14.399.5GSM139928Anther immature pollen rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
11.499.3GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivars
11.199.3GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.599.1GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivars
6.398.2GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.298.1GSM246394SB69_Stem_ rep1_at anthesisGSE9767Genotypic differences in water soluble carbohydrate metabolism in stem
5.297.5GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological reps
5.297.5GSM298093Crown tissue of Solstice at 5 weeks post germinationGSE11774Expression data from cold treated wheat cultivars
5.097.4GSM138154genotype H5 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.562e-131468TaAffx.8533.1.S1_s_atCA623870--5e-6At3g212404CL2 (4-COUMARATE:COA LIGASE 2)C.G.S.X.
0.366e-67254TaAffx.30205.2.S1_s_atCA627137--1e-4At3g212404CL2 (4-COUMARATE:COA LIGASE 2)C.G.S.X.
0.284e-49194Ta.5623.1.S1_x_atCK197632--2e+0At3g212404CL2 (4-COUMARATE:COA LIGASE 2)C.G.S.X.
0.167e-1167TaAffx.128713.1.S1_atCK215460--1e-8At3g212404CL2 (4-COUMARATE:COA LIGASE 2)C.G.S.X.
0.061e-654Ta.3609.1.S1_a_atCA501559--3e-7At1g62940ACOS5 (ACYL-COA SYNTHETASE 5)C.G.S.X.
0.114e-652Ta.29966.1.S1_atCA683806--6e-1At5g11500unknown proteinC.G.S.X.
0.242e-550TaAffx.108196.1.S1_atCA690860--1e+1At5g47520AtRABA5a (Arabidopsis Rab GTPase homolog A5a)C.G.S.X.
0.142e-240Ta.3609.3.S1_a_atBJ208086--5e-6At1g62940ACOS5 (ACYL-COA SYNTHETASE 5)C.G.S.X.
0.011e+034Ta.13336.1.S1_atCK212277apetala2 protein-3e-16At5g67180AP2 domain-containing transcription factor, putativeC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.054e-342Arabidopsis thalianaAt3g212308216774CL5 (4-coumarate:CoA ligase 5)The gene encodes a 4-coumarate coenzyme A ligase being able to use sinapate as substrate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, 5-OH-ferulic acid, ferulic acid and sinapic acid. At4CL5 was unable to use cinnamic acid as substrate. Knockout of At4CL5 (4cl5) revealed no effect on syringyl lignin content indicating that the activity observed does probably not occur in vivo.---C.G.S.X.
0.103e-1479Glycine maxGma.4928.1.S1_a_atAF002259.14-coumarate:CoA ligase isoenzyme 2-4e-9At1g516804CL1 (4-COUMARATE:COA LIGASE 1)C.G.S.X.
0.282e-65248Hordeum vulgareContig4674_atContig4674--5e-2At1g516804CL1 (4-COUMARATE:COA LIGASE 1)C.G.S.X.
0.232e-74280Oryza sativaOs06g0656500AK068985.1--2e-2At3g212404CL2 (4-COUMARATE:COA LIGASE 2)C.G.S.X.
0.075e-342Populus trichocarpaPtpAffx.12056.3.S1_a_atCV2594944-Coumarate:CoA ligase-5e-22At1g650604CL3C.G.S.X.
0.149e-2095Vitis vinifera1609307_atCD715818hypothetical protein LOC100254698-3e-16At3g212404CL2 (4-COUMARATE:COA LIGASE 2)C.G.S.X.
0.460636Zea maysZm.1390.1.A1_atAY106966.1--3e-3At3g212304CL5 (4-coumarate:CoA ligase 5)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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