Gene omics information

Query gene ID	TaAffx.85163.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	TaAffx.85163.1.S1_at	CA622273	-	-	1e-6	At3g62660	GATL7 (Galacturonosyltransferase-like 7)	S.X.	H.G.	Please select
0.15	17.1	TaAffx.61585.1.A1_at	BJ261517	-	-	2e-1	At3g06490	MYB108 (myb domain protein 108)	S.X.	H.G.	Please select
0.11	12.4	Ta.18438.1.S1_at	CA636671	-	-	1e+1	At5g21940	unknown protein	S.X.	H.G.	Please select
0.01	2.4	Ta.9666.2.S1_x_at	BJ233257	-	-	1e+0	At5g14320	30S ribosomal protein S13, chloroplast (CS13)	S.X.	H.G.	Please select
0.01	2.4	Ta.9247.2.S1_at	CA635085	-	-	3e-4	At4g35020	ARAC3 (ARABIDOPSIS RAC-LIKE 3)	S.X.	H.G.	Please select
0.01	2.4	TaAffx.77881.1.S1_at	CA741326	-	-	2e+1	Atcg00065	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
42.0	99.9	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
20.5	99.7	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
19.7	99.7	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
12.8	99.4	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
12.3	99.4	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
10.7	99.2	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
10.5	99.2	GSM343686	Wheat var. Kennedy_Fp inoculated_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
9.0	99.0	GSM314268	tissue type: seedling, leaf - rep3	GSE12508	Transcription patterns during wheat development
8.5	98.9	GSM111209	genotype F36 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
8.3	98.8	GSM250894	TcLr34_3dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	TaAffx.78488.1.S1_at	CA731809	-	-	4e-3	At1g12630	DNA binding / transcription activator/ transcription factor	C.G.	S.X.	Please select
0.03	1e+0	34	TaAffx.80772.1.S1_at	CA692757	-	-	3e+0	At2g01200	IAA32 (INDOLE-3-ACETIC ACID INDUCIBLE 32)	C.G.	S.X.	Please select
0.03	1e+0	34	TaAffx.59779.1.S1_x_at	CA595426	-	-	2e-5	At5g41970	-	C.G.	S.X.	Please select
0.03	1e+0	34	Ta.6154.2.A1_at	BJ290708	-	-	2e-1	At5g40230	nodulin-related	C.G.	S.X.	Please select
0.02	1e+0	34	Ta.6154.1.S1_at	CK205501	-	-	2e+0	At4g26880	stigma-specific Stig1 family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Ta.23397.1.S1_x_at	BJ292777	-	-	3e-2	At4g33660	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Ta.23397.2.S1_x_at	CA718270	-	-	1e-1	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	C.G.	S.X.	Please select
0.02	1e+0	34	Ta.23397.2.S1_at	CA718270	-	-	1e-1	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	C.G.	S.X.	Please select
0.03	1e+0	34	Ta.18645.1.A1_at	BJ323047	-	-	5e-3	At1g10940	SNRK2.4 (SNF1-RELATED PROTEIN KINASE 2.4)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-6	54	Arabidopsis thaliana	At3g62660	825440	GATL7 (Galacturonosyltransferase-like 7)	Encodes a protein with putative galacturonosyltransferase activity.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	4e-4	46	Glycine max	Gma.16749.1.S1_at	CD407063	-	-	3e-18	At3g62660	GATL7 (Galacturonosyltransferase-like 7)	C.G.	S.X.	Please select
0.03	5e-1	34	Hordeum vulgare	HZ54L05r_at	HZ54L05r	-	-	1e+0	At3g55790	unknown protein	C.G.	S.X.	Please select
0.20	4e-94	345	Oryza sativa	Os03g0300900	AK119594.1	-	Glycosyl transferase, family 8 protein	5e-9	At3g62660	GATL7 (Galacturonosyltransferase-like 7)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.131.2.S1_a_at	BU879883	hypothetical protein	-	7e-2	At3g17160	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e+0	30	Vitis vinifera	1617372_x_at	CF201816.1	-	-	1e-5	At2g22860	ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR)	C.G.	S.X.	Please select
0.04	5e-4	44	Zea mays	Zm.3792.1.S1_at	CA826763	hypothetical protein LOC100276631	-	9e-2	At2g45450	ZPR1 (LITTLE ZIPPER 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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