CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID TaAffx.85023.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.2 TaAffx.85023.1.S1_at CA626261 - - 4e+0 At4g24740 AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2) S.X. H.G.
0.38 54.7 Ta.12942.1.S1_at CA594614 - - 2e-25 At5g53900 unknown protein S.X. H.G.
0.31 42.7 TaAffx.30797.2.S1_at CA623819 - - 1e-3 At5g24610 unknown protein S.X. H.G.
0.30 40.9 Ta.1679.3.S1_at CA610132 - - 3e-1 At5g45590 unknown protein S.X. H.G.
0.29 39.2 TaAffx.29732.1.S1_at CA636473 - - 7e-1 At4g14550 IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14) S.X. H.G.
0.29 39.2 TaAffx.30628.1.S1_at CA623492 - - 1e-3 At2g35960 NHL12 S.X. H.G.
0.27 35.6 TaAffx.38268.1.A1_at BJ242361 - - 1e+0 At1g21326 VQ motif-containing protein S.X. H.G.
0.26 33.6 TaAffx.58533.1.S1_at CA618813 - - 1e+0 At5g47700 60S acidic ribosomal protein P1 (RPP1C) S.X. H.G.
0.26 33.6 TaAffx.65462.1.S1_at BJ245082 - - 9e-1 At3g18300 unknown protein S.X. H.G.
0.21 25.5 TaAffx.34241.2.S1_at CA722326 - - 4e+0 At5g51960 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.1 99.7 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
9.1 99.0 GSM298069 Leaf tissue of Paragon at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
8.9 99.0 GSM111233 genotype H8 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
7.0 98.5 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.0 98.0 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.7 97.9 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.1 97.5 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.1 97.5 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
5.1 97.5 GSM298090 Leaf tissue of Solstice at 5 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
4.7 97.1 GSM138193 genotype B33 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 3e-10 65 TaAffx.89897.1.S1_at CA683818 - - 1e+0 At3g60390 HAT3 (HOMEOBOX-LEUCINE ZIPPER PROTEIN 3) C.G. S.X.
0.04 3e-1 36 Ta.7474.2.S1_a_at CA603080 - - 5e-9 At2g39770 CYT1 (CYTOKINESIS DEFECTIVE 1) C.G. S.X.
0.02 3e-1 36 Ta.6942.2.S1_at BJ226072 - - 2e-60 At1g52360 coatomer protein complex, subunit beta 2 (beta prime), putative C.G. S.X.
0.04 1e+0 34 TaAffx.32155.1.S1_at CA600009 - - 3e+0 At2g36695 unknown protein C.G. S.X.
0.06 1e+0 34 TaAffx.113190.1.S1_at CA617403 - - 7e+0 At5g43850 ARD4 C.G. S.X.
0.02 1e+0 34 Ta.8767.1.S1_a_at BJ241108 - - 3e-3 At4g36980 unknown protein C.G. S.X.
0.02 1e+0 34 Ta.8767.1.S1_at BJ241108 - - 3e-3 At4g36980 unknown protein C.G. S.X.
0.03 1e+0 34 Ta.7414.1.S1_at CA653929 - - 1e+0 At4g15510 photosystem II reaction center PsbP family protein C.G. S.X.
0.03 4e+0 32 TaAffx.93414.1.S1_at BJ211780 - - 7e-2 At1g12610 DDF1 (DWARF AND DELAYED FLOWERING 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e+0 32 Arabidopsis thaliana At4g24740 828576 AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2) a LAMMER-type protein kinase that co-precipitates with serine/arginine-rich (SR) proteins in vitro, interaction modulated by phosphorylation of the proteins. - - - C.G. S.X.
0.04 4e-1 36 Glycine max GmaAffx.38146.1.S1_at BU926345 - - 8e-1 At2g10608 unknown protein C.G. S.X.
0.35 2e-43 174 Hordeum vulgare Contig13491_at Contig13491 - - 2e+0 At3g02493 RTFL19 (ROTUNDIFOLIA LIKE 19) C.G. S.X.
0.31 9e-52 204 Oryza sativa Os04g0600400 AK072894.1 - Conserved hypothetical protein 6e-1 At2g35470 unknown protein C.G. S.X.
0.08 2e-2 40 Populus trichocarpa PtpAffx.118796.1.S1_at CK093055 hypothetical protein - 2e-3 At4g19140 unknown protein C.G. S.X.
0.04 5e+0 30 Vitis vinifera 1619086_at CA818377 hypothetical protein LOC100265889 - 1e-1 At3g62550 universal stress protein (USP) family protein C.G. S.X.
0.05 2e+0 32 Zea mays Zm.17545.1.A1_at BM350102 hypothetical protein LOC100273664 - 1e-1 At1g67856 protein binding / zinc ion binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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