Gene omics information

Query gene ID	TaAffx.83758.1.S1_s_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	93.4	TaAffx.83758.1.S1_s_at	CA651869	-	-	2e-8	At1g14000	VIK (VH1-INTERACTING KINASE)	S.X.	H.G.	Please select
0.83	93.4	Ta.25620.2.S1_a_at	CA660400	-	-	1e-3	At5g63490	CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein	S.X.	H.G.	Please select
0.63	83.1	Ta.7233.3.S1_at	BE498466	-	-	5e+0	At5g42905	nucleic acid binding / ribonuclease H	S.X.	H.G.	Please select
0.61	82.0	TaAffx.92837.1.S1_at	BJ245557	-	-	3e-10	At3g05820	beta-fructofuranosidase/ catalytic	S.X.	H.G.	Please select
0.57	79.2	TaAffx.12601.1.S1_at	BJ250092	-	-	9e-5	At2g37290	RabGAP/TBC domain-containing protein	S.X.	H.G.	Please select
0.42	60.9	TaAffx.31075.1.S1_s_at	CA619722	-	-	4e+0	At1g31020	ATO2 (Arabidopsis thioredoxin o2)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
27.1	99.8	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
23.1	99.8	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
22.0	99.8	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
9.7	99.1	GSM143502	Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
7.5	98.6	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
6.9	98.4	GSM143515	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.5	97.8	GSM143504	Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.4	97.7	GSM143509	Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.3	97.6	GSM143516	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.1	97.5	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.39	5e-139	494	Ta.30049.1.S1_at	CA743705	-	-	1e-26	At1g14000	VIK (VH1-INTERACTING KINASE)	C.G.	S.X.	Please select
0.03	5e-3	42	Ta.5352.2.S1_at	CK208861	-	-	3e-5	At2g35630	MOR1 (MICROTUBULE ORGANIZATION 1)	C.G.	S.X.	Please select
0.02	5e+0	32	TaAffx.83505.1.S1_at	CA662211	-	-	2e-1	At3g52380	CP33	C.G.	S.X.	Please select
0.03	5e+0	32	TaAffx.12592.2.S1_at	BJ245244	-	-	1e+0	At2g37300	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	32	TaAffx.123645.1.S1_at	CA651566	-	-	1e-7	At5g35560	DENN (AEX-3) domain-containing protein	C.G.	S.X.	Please select
0.01	5e+0	32	Ta.7042.1.S1_at	BJ319825	-	-	6e-2	At1g62240	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	32	Ta.12253.1.A1_at	BQ171951	-	-	3e+0	At4g03945	enzyme inhibitor/ pectinesterase	C.G.	S.X.	Please select
0.02	2e+1	30	TaAffx.98141.1.A1_at	BG607866	-	-	1e+0	At4g34770	auxin-responsive family protein	C.G.	S.X.	Please select
0.02	2e+1	30	TaAffx.83505.2.S1_s_at	CA657652	-	-	2e+0	At5g04340	ZAT6 (ZINC FINGER OF ARABIDOPSIS THALIANA 6)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	2e-8	59	Arabidopsis thaliana	At1g14000	837960	VIK (VH1-INTERACTING KINASE)	Encodes a protein with similarity to members of the C1 subgroup of MAP kinase kinase kinases. Interacts physically with the receptor kinase BRL2/VH1 and appears to be involved in auxin and brassinosteriod signaling.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	3e-8	59	Glycine max	Gma.11000.1.S1_at	BI967607	-	-	1e-76	At1g14000	VIK (VH1-INTERACTING KINASE)	C.G.	S.X.	Please select
0.47	2e-93	341	Hordeum vulgare	Contig14702_at	Contig14702	-	-	3e-33	At1g14000	VIK (VH1-INTERACTING KINASE)	C.G.	S.X.	Please select
0.24	5e-57	222	Oryza sativa	Os07g0632800	NM_193100.1	-	Protein kinase domain containing protein	1e-48	At1g14000	VIK (VH1-INTERACTING KINASE)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	8e-9	61	Populus trichocarpa	Ptp.6290.1.S1_at	CA925968	hypothetical protein	-	8e-58	At1g14000	VIK (VH1-INTERACTING KINASE)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	6e+0	30	Vitis vinifera	1608550_at	CA818569	-	-	4e-1	At4g10100	CNX7	C.G.	S.X.	Please select
0.03	8e+0	30	Zea mays	ZmAffx.785.1.A1_at	AI759084	-	-	3e+0	At5g51780	basix helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage