CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID TaAffx.83463.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.43 62.2 TaAffx.83463.1.S1_at CA697862 - - 1e+0 At4g36620 zinc finger (GATA type) family protein S.X. H.G.
0.63 83.1 TaAffx.61855.2.S1_at CA614570 - - 4e+0 At3g44150 unknown protein S.X. H.G.
0.57 79.2 Ta.16493.1.A1_s_at CA607256 - - 3e-1 At1g78410 VQ motif-containing protein S.X. H.G.
0.55 76.8 TaAffx.61855.2.S1_x_at CA614570 - - 4e+0 At3g44150 unknown protein S.X. H.G.
0.36 51.9 Ta.30414.1.S1_at CA606112 - - 4e-21 At4g27880 seven in absentia (SINA) family protein S.X. H.G.
0.27 35.6 Ta.28571.1.S1_s_at CA639817 - - 8e-5 At3g47810 MAG1 (MAIGO 1) S.X. H.G.
0.17 19.8 Ta.24358.1.S1_s_at CA611190 - - 3e+0 At1g22410 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.5 98.3 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.9 97.3 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.6 97.0 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3 96.7 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8 96.0 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5 95.4 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
3.5 95.4 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2 94.8 GSM143507 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.6 92.9 GSM143506 Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.5 92.5 GSM298076 Crown tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-4 46 Ta.6166.1.S1_at BQ170305 - - 7e-41 At2g19830 SNF7.2 C.G. S.X.
0.04 1e-3 44 TaAffx.32108.1.S1_at CA600672 - - 1e+0 At1g70540 EDA24 (embryo sac development arrest 24) C.G. S.X.
0.05 1e-3 44 Ta.15878.1.S1_at CA499544 - - 5e-1 At4g30662 unknown protein C.G. S.X.
0.03 5e-3 42 TaAffx.2027.1.A1_at BJ247043 - - 3e+1 At5g28720 unknown protein C.G. S.X.
0.01 5e-3 42 TaAffx.120936.1.S1_at BJ307684 - - 1e-25 At5g65700 BAM1 (BARELY ANY MERISTEM 1) C.G. S.X.
0.02 5e-3 42 Ta.28892.1.S1_s_at CK198796 - - 2e-11 At2g25070 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.02 5e-3 42 Ta.26137.1.S1_at CD881575 - - 1e-2 At4g33440 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.01 5e-3 42 Ta.1058.4.S1_at BJ307805 - - 5e-12 At3g02468 CPuORF9 (Conserved peptide upstream open reading frame 9) C.G. S.X.
0.03 2e-2 40 TaAffx.5682.1.S1_at CA702790 - - 7e+0 At5g40300 integral membrane protein, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At4g36620 829814 zinc finger (GATA type) family protein F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;FPMO - - - C.G. S.X.
0.04 1e-1 38 Glycine max GmaAffx.19737.1.S1_at AW705178 - - 2e+0 At2g20495 - C.G. S.X.
0.58 0 799 Hordeum vulgare Contig14176_at Contig14176 - - 5e-1 At1g16210 unknown protein C.G. S.X.
0.45 4e-76 286 Oryza sativa Os02g0717100 AK063741.1 - Esterase/lipase/thioesterase domain containingprotein 5e-4 At5g19630 unknown protein C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.223045.1.S1_at pmrna40837 hypothetical protein - 3e+0 At2g21730 CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2) C.G. S.X.
0.03 9e-2 36 Vitis vinifera 1609598_at BQ800096 hypothetical protein LOC100245060 - 2e-11 At3g07630 ADT2 (arogenate dehydratase 2) C.G. S.X.
0.13 2e-6 52 Zea mays Zm.12514.1.A1_at BM379568 hypothetical protein LOC100193276 - 3e-1 At2g37410 ATTIM17-2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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