Gene omics information

Query gene ID	TaAffx.82721.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	TaAffx.82721.1.S1_at	CA668034	-	-	3e+1	At4g20780	calcium-binding protein, putative	S.X.	H.G.	Please select
0.67	86.3	TaAffx.110652.1.S1_at	CA656567	-	-	1e-2	At2g23690	unknown protein	S.X.	H.G.	Please select
0.53	74.9	TaAffx.110167.1.S1_at	CA662870	-	-	4e+0	At4g14440	HCD1 (3-HYDROXYACYL-COA DEHYDRATASE 1)	S.X.	H.G.	Please select
0.38	54.7	TaAffx.132656.2.S1_at	CA600729	-	-	1e+0	At1g76500	SOB3 (SUPPRESSOR OF PHYB-4#3)	S.X.	H.G.	Please select
0.38	54.7	TaAffx.78822.1.S1_at	CA726823	-	-	1e+0	At5g01075	beta-galactosidase	S.X.	H.G.	Please select
0.37	53.0	TaAffx.85941.1.S1_at	CA618291	-	-	2e+1	At5g23760	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
28.5	99.8	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
19.0	99.7	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
13.0	99.4	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
12.5	99.4	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
12.3	99.4	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.0	99.0	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.8	98.9	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
8.7	98.9	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.6	98.7	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.5	98.6	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	3e-12	71	Ta.30535.3.S1_at	CA667549	-	-	1e+0	At5g27889	unknown protein	C.G.	S.X.	Please select
0.06	4e-11	67	Ta.13213.1.A1_x_at	BQ170895	-	-	4e-7	At5g21930	PAA2 (P-TYPE ATPASE OF ARABIDOPSIS 2)	C.G.	S.X.	Please select
0.09	2e-10	65	TaAffx.82695.1.S1_at	CA668467	-	-	4e+0	At2g03937	-	C.G.	S.X.	Please select
0.09	2e-10	65	TaAffx.82307.1.S1_at	CA673812	-	-	1e+1	Atcg00050	-	C.G.	S.X.	Please select
0.09	2e-10	65	TaAffx.7056.1.S1_at	CA669593	-	-	3e+0	At5g17073	unknown protein	C.G.	S.X.	Please select
0.06	2e-10	65	TaAffx.55384.1.S1_at	BQ803808	-	-	7e+0	At5g27940	WPP3 (WPP domain protein 3)	C.G.	S.X.	Please select
0.08	2e-10	65	TaAffx.27978.1.S1_at	CA667152	-	-	4e+0	At2g19045	RALFL13 (RALF-LIKE 13)	C.G.	S.X.	Please select
0.09	2e-10	65	TaAffx.27683.1.S1_at	CA672363	-	-	1e+1	At5g17090	-	C.G.	S.X.	Please select
0.08	2e-10	65	TaAffx.135182.1.S1_at	CA673772	-	-	2e+1	At5g23640	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e+1	28	Arabidopsis thaliana	At4g20780	827826	calcium-binding protein, putative	F:calcium ion binding;P:unknown;C:cellular_component unknown;MPFOBV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	3e+0	32	Glycine max	HgAffx.3511.1.S1_at	CK349179	-	-	2e+0	At5g56700	F-box protein-related	C.G.	S.X.	Please select
0.04	4e-6	50	Hordeum vulgare	Contig13431_at	Contig13431	-	-	8e-7	At5g21930	PAA2 (P-TYPE ATPASE OF ARABIDOPSIS 2)	C.G.	S.X.	Please select
0.04	2e+1	30	Oryza sativa	OsAffx.7294.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+1	30	Populus trichocarpa	Ptp.607.2.S1_a_at	BU888225	hypothetical protein	-	2e-14	At1g51070	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+1	28	Vitis vinifera	1612632_at	CD797576	-	-	9e-1	At1g09625	unknown protein	C.G.	S.X.	Please select
0.04	9e-1	32	Zea mays	Zm.970.1.S1_at	BE638646	hypothetical protein LOC100277398	-	9e-1	At2g43950	OEP37	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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