Gene omics information

Query gene ID	TaAffx.8112.2.S1_s_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	TaAffx.8112.2.S1_s_at	CA723801	-	-	1e+1	At3g13224	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.91	98.2	Ta.30790.2.S1_at	CD919145	-	-	2e-1	At3g58850	PAR2 (PHY RAPIDLY REGULATED 2)	S.X.	H.G.	Please select
0.77	90.8	TaAffx.8112.1.S1_x_at	BQ801783	-	-	2e+1	At4g32930	unknown protein	S.X.	H.G.	Please select
0.77	90.8	Ta.30790.1.S1_at	CK195596	-	-	1e-1	At1g12665	-	S.X.	H.G.	Please select
0.63	83.1	Ta.30790.1.S1_a_at	CK195596	-	-	1e-1	At1g12665	-	S.X.	H.G.	Please select
0.50	72.4	Ta.14005.1.S1_x_at	CK216207	-	-	2e+1	At5g45550	mob1/phocein family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
51.0	99.9	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
40.6	99.9	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
36.4	99.9	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
5.2	97.5	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.2	97.5	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.2	97.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.6	97.0	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM250886	TcLr1_3dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.3	95.0	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	1e-132	472	TaAffx.8112.1.S1_x_at	BQ801783	-	-	2e+1	At4g32930	unknown protein	C.G.	S.X.	Please select
0.37	5e-92	337	Ta.14005.1.S1_x_at	CK216207	-	-	2e+1	At5g45550	mob1/phocein family protein	C.G.	S.X.	Please select
0.37	5e-92	337	Ta.14005.1.S1_s_at	CK216207	-	-	2e+1	At5g45550	mob1/phocein family protein	C.G.	S.X.	Please select
0.47	3e-65	248	TaAffx.8112.3.S1_at	CA681089	-	-	2e+1	At4g16695	unknown protein	C.G.	S.X.	Please select
0.28	1e-37	157	TaAffx.58493.1.S1_at	CA624026	-	-	2e+1	At3g02160	DNA binding	C.G.	S.X.	Please select
0.07	6e-5	48	TaAffx.48658.1.S1_x_at	BJ318495	-	-	2e+0	At5g17900	-	C.G.	S.X.	Please select
0.07	6e-5	48	TaAffx.48658.1.S1_s_at	BJ318495	-	-	2e+0	At5g17900	-	C.G.	S.X.	Please select
0.06	1e-2	40	Ta.28951.2.S1_a_at	CA732834	-	-	3e-1	At4g14730	transmembrane protein-related	C.G.	S.X.	Please select
0.03	2e-1	36	Ta.7351.1.S1_x_at	CA693609	-	-	1e-1	At1g47970	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+1	30	Arabidopsis thaliana	At3g13224	820515	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFBA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.33932.1.S1_at	CA937963	-	-	8e-1	At1g30890	integral membrane HRF1 family protein	C.G.	S.X.	Please select
0.30	1e-84	311	Hordeum vulgare	Contig7012_at	Contig7012	-	-	6e+0	At1g57730	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.29	2e-49	196	Oryza sativa	Os03g0206400	AK066494.1	-	Conserved hypothetical protein	1e+0	At5g17220	ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e+1	30	Populus trichocarpa	PtpAffx.219499.1.S1_at	pmrna35438	hypothetical protein	-	4e+0	At5g06280	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e+0	30	Vitis vinifera	1616269_at	CF514732	similar to putative protein	-	2e-1	At3g60480	unknown protein	C.G.	S.X.	Please select
0.04	3e-2	38	Zea mays	Zm.7847.1.A1_at	BM080149	-	-	1e+0	At3g27416	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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