Gene omics information

Query gene ID	TaAffx.8084.2.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	83.1	TaAffx.8084.2.S1_at	CA742580	-	-	3e-2	At5g02480	-	S.X.	H.G.	Please select
0.73	89.1	TaAffx.15154.2.S1_s_at	CA744371	-	-	9e-1	At3g62030	peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4)	S.X.	H.G.	Please select
0.73	89.1	TaAffx.78296.1.S1_at	CA734700	-	-	8e-1	At5g45700	NLI interacting factor (NIF) family protein	S.X.	H.G.	Please select
0.71	88.0	Ta.6692.2.A1_at	CA678021	-	-	1e-6	At4g36960	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.67	86.3	Ta.13274.2.A1_at	CA613778	-	-	7e-2	At5g05360	unknown protein	S.X.	H.G.	Please select
0.55	76.8	Ta.28190.2.S1_a_at	CA654134	-	-	7e-2	At5g07620	protein kinase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
29.6	99.8	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
17.3	99.6	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
11.6	99.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.9	99.0	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
8.6	98.9	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
7.7	98.7	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.5	98.6	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.6	98.3	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.2	98.1	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.2	98.1	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.39	2e-132	472	TaAffx.8084.1.S1_at	CK205866	-	-	2e+0	At3g18130	RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C)	C.G.	S.X.	Please select
0.34	3e-101	369	TaAffx.8084.3.S1_at	CA662650	-	-	2e+0	At5g13830	FtsJ-like methyltransferase family protein	C.G.	S.X.	Please select
0.15	2e-37	157	TaAffx.8084.4.S1_at	CA734438	-	-	1e+0	At3g53530	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.15	2e-37	157	TaAffx.8084.4.S1_x_at	CA734438	-	-	1e+0	At3g53530	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.04	5e-1	36	Ta.7321.1.A1_a_at	BJ252317	-	-	2e-5	At2g37570	SLT1 (sodium- and lithium-tolerant 1)	C.G.	S.X.	Please select
0.03	2e+0	34	TaAffx.88756.1.S1_at	CA729162	-	-	2e+1	At5g20165	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	34	Ta.21252.1.S1_x_at	BJ239643	-	-	1e-2	At2g45640	SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18)	C.G.	S.X.	Please select
0.02	2e+0	34	Ta.21252.3.S1_a_at	CA630645	-	-	1e+0	At2g45640	SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18)	C.G.	S.X.	Please select
0.02	2e+0	34	Ta.21252.3.S1_at	CA630645	-	-	1e+0	At2g45640	SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-2	40	Arabidopsis thaliana	At5g02480	831883	-	F:unknown;P:unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e-1	36	Glycine max	HgAffx.7213.1.S1_at	CB824998	-	-	3e-1	At3g43083	LCR33 (Low-molecular-weight cysteine-rich 33)	C.G.	S.X.	Please select
0.18	3e-167	587	Hordeum vulgare	Contig6641_at	Contig6641	-	-	2e-15	At2g37570	SLT1 (sodium- and lithium-tolerant 1)	C.G.	S.X.	Please select
0.21	2e-85	317	Oryza sativa	Os.27079.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	4e-5	50	Populus trichocarpa	Ptp.1351.1.S1_at	BP934436	hypothetical protein	-	1e-16	At3g12570	FYD	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.12	5e-4	44	Vitis vinifera	1617276_at	CF207725	hypothetical protein LOC100243332	-	2e-7	At2g37570	SLT1 (sodium- and lithium-tolerant 1)	C.G.	S.X.	Please select
0.37	2e-56	218	Zea mays	Zm.1774.1.A1_at	BF728585	hypothetical protein LOC100280228	-	1e+0	At2g37570	SLT1 (sodium- and lithium-tolerant 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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