Gene omics information

Query gene ID	TaAffx.80668.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	TaAffx.80668.1.S1_at	CA694164	-	-	1e+0	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	S.X.	H.G.	Please select
0.55	76.8	TaAffx.108775.1.S1_at	CA684251	-	-	3e+0	At5g47570	unknown protein	S.X.	H.G.	Please select
0.50	72.4	TaAffx.99206.1.S1_at	CA727631	-	-	3e-1	At4g21610	LOL2 (LSD ONE LIKE 2)	S.X.	H.G.	Please select
0.36	51.9	Ta.25522.2.S1_x_at	CA683586	-	-	2e-1	At4g13560	UNE15 (unfertilized embryo sac 15)	S.X.	H.G.	Please select
0.36	51.9	TaAffx.113756.1.S1_at	CA605644	-	-	1e-3	At5g04250	OTU-like cysteine protease family protein	S.X.	H.G.	Please select
0.27	35.6	TaAffx.5521.1.S1_at	CA708179	-	-	3e+0	At1g13960	WRKY4	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.8	99.6	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
11.9	99.4	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
11.6	99.3	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.7	99.2	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
10.0	99.1	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.4	98.2	GSM298089	Leaf tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.3	98.2	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.8	97.9	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.4	97.7	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.2	97.5	GSM298079	Leaf tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.42	6e-135	480	Ta.1595.1.S1_at	BQ801056	-	-	6e-1	At3g47440	TIP5	C.G.	S.X.	Please select
0.04	7e-2	38	TaAffx.8849.1.S1_at	CA619245	-	-	4e+0	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.04	7e-2	38	TaAffx.85455.1.S1_at	CA622637	-	-	4e+0	At5g42040	RPN12b (Regulatory Particle Non-ATPase 12b)	C.G.	S.X.	Please select
0.04	7e-2	38	TaAffx.31061.1.S1_at	CA619888	-	-	2e-2	At1g44770	unknown protein	C.G.	S.X.	Please select
0.04	7e-2	38	TaAffx.31061.1.S1_x_at	CA619888	-	-	2e-2	At1g44770	unknown protein	C.G.	S.X.	Please select
0.04	7e-2	38	TaAffx.112755.1.S1_at	CA621244	-	-	7e-2	At5g53590	auxin-responsive family protein	C.G.	S.X.	Please select
0.07	7e-2	38	TaAffx.110250.1.S1_x_at	CA678972	-	-	4e+0	At3g15518	unknown protein	C.G.	S.X.	Please select
0.10	7e-2	38	TaAffx.110250.3.S1_x_at	CA696094	-	-	7e-2	At3g15518	unknown protein	C.G.	S.X.	Please select
0.10	7e-2	38	TaAffx.110250.3.S1_at	CA696094	-	-	7e-2	At3g15518	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At5g47700	834821	60S acidic ribosomal protein P1 (RPP1C)	F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane;MFPOAB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	PsAffx.psMY006iD03r_at	PsAffx.psMY006iD03r	-	-	4e+0	At5g03030	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.04	2e-3	42	Hordeum vulgare	Contig19305_at	Contig19305	-	-	3e-1	At5g16390	CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)	C.G.	S.X.	Please select
0.11	3e-2	40	Oryza sativa	OsAffx.14978.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e+0	32	Populus trichocarpa	PtpAffx.218716.1.S1_at	pmrna34438	hypothetical protein	-	1e+0	At5g20020	RAN2	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e+0	32	Vitis vinifera	1621568_at	CF415414	hypothetical protein LOC100252433	-	1e+0	At2g07721	unknown protein	C.G.	S.X.	Please select
0.03	3e-2	38	Zea mays	Zm.16488.1.A1_at	CD440410	hypothetical protein LOC100277264 /// hypothetical protein LOC100280361 /// nonspecific lipid-transfer protein 4	-	7e+0	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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