Gene omics information

Query gene ID	TaAffx.80002.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	TaAffx.80002.1.S1_at	CA704464	-	-	6e-2	At4g13530	unknown protein	S.X.	H.G.	Please select
0.02	3.6	Ta.21559.3.S1_x_at	CA604257	-	-	3e-4	At5g24420	glucosamine/galactosamine-6-phosphate isomerase-related	S.X.	H.G.	Please select
0.02	3.6	Ta.3708.3.S1_x_at	CA655038	-	-	5e-15	At4g00850	GIF3 (GRF1-INTERACTING FACTOR 3)	S.X.	H.G.	Please select
0.02	3.6	Ta.28649.3.S1_x_at	BJ321003	-	-	8e-4	At4g19200	proline-rich family protein	S.X.	H.G.	Please select
0.01	2.4	Ta.28649.1.S1_x_at	BJ309733	-	-	1e-5	At4g19200	proline-rich family protein	S.X.	H.G.	Please select
0.00	0.7	Ta.7234.2.S1_at	BJ269596	-	-	2e-8	At2g45010	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
28.7	99.8	GSM138162	genotype E5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
11.9	99.4	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
9.6	99.1	GSM138201	genotype F48 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
9.5	99.1	GSM138193	genotype B33 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
8.7	98.9	GSM298066	Leaf tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
8.6	98.9	GSM298073	Crown tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
7.8	98.7	GSM138187	genotype F38b developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
7.8	98.7	GSM111195	genotype C25 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
7.4	98.6	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.4	98.6	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-1	36	TaAffx.112935.1.S1_at	CA619646	-	-	5e-2	At3g53235	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Ta.6743.1.S1_at	BJ320266	MADS-box transcription factor TaAGL11	-	4e-11	At2g22540	SVP (SHORT VEGETATIVE PHASE)	C.G.	S.X.	Please select
0.03	1e+0	34	TaAffx.3194.2.S1_x_at	BQ608696	-	-	4e+0	At3g51720	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	34	TaAffx.3194.2.S1_at	BQ608696	-	-	4e+0	At3g51720	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	34	TaAffx.30555.1.S1_at	CA624116	-	-	6e-2	At5g66400	RAB18 (RESPONSIVE TO ABA 18)	C.G.	S.X.	Please select
0.02	1e+0	34	TaAffx.107339.1.S1_at	BQ801686	-	-	8e-16	At5g67380	CKA1 (CASEIN KINASE ALPHA 1)	C.G.	S.X.	Please select
0.02	1e+0	34	Ta.6265.1.S1_at	CK205463	-	-	3e-16	At1g48030	mtLPD1 (mitochondrial lipoamide dehydrogenase 1)	C.G.	S.X.	Please select
0.03	4e+0	32	TaAffx.9386.1.S1_at	CA600245	-	-	1e-3	At3g53235	unknown protein	C.G.	S.X.	Please select
0.03	4e+0	32	TaAffx.92854.1.S1_at	BJ244926	-	-	2e+1	At4g27930	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e-2	38	Arabidopsis thaliana	At4g13530	826985	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	5e-3	42	Glycine max	GmaAffx.86730.1.S1_at	BI469214	-	-	2e-1	At5g64890	PROPEP2 (Elicitor peptide 2 precursor)	C.G.	S.X.	Please select
0.04	4e-1	34	Hordeum vulgare	Contig18572_at	Contig18572	-	-	6e-5	At4g33660	unknown protein	C.G.	S.X.	Please select
0.05	3e-2	40	Oryza sativa	OsAffx.23473.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	8e-2	38	Populus trichocarpa	PtpAffx.653.5.A1_x_at	CV274410	-	-	2e-4	At1g26250	proline-rich extensin, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	7e-2	36	Vitis vinifera	1614762_at	CF414632	-	-	1e-2	At5g65207	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.9163.1.A1_at	BM267003	-	-	8e-2	At4g33660	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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