CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID TaAffx.79647.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 93.4 TaAffx.79647.1.S1_at CA711438 - - 9e+0 At4g22753 SMO1-3 (STEROL 4-ALPHA METHYL OXIDASE 1-3) S.X. H.G.
0.50 72.4 Ta.20658.2.S1_x_at BJ285838 - - 9e-3 At2g18020 EMB2296 (embryo defective 2296) S.X. H.G.
0.20 24.0 TaAffx.6325.1.S1_at CA688000 - - 3e-1 At3g52105 unknown protein S.X. H.G.
0.16 18.2 Ta.19349.1.S1_x_at CA650715 - - 3e-1 At3g52105 unknown protein S.X. H.G.
0.02 3.6 Ta.8305.1.S1_at BQ161719 - - 5e-1 At5g39540 - S.X. H.G.
0.01 2.4 Ta.20658.3.S1_x_at BJ294354 - - 1e+0 At5g40690 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.0 99.6 GSM111244 genotype G13 developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
12.0 99.4 GSM111177 genotype E5 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
11.5 99.3 GSM111215 genotype C58 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
11.1 99.3 GSM138164 genotype D15 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
11.0 99.3 GSM111186 genotype B68 developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
10.1 99.2 GSM111198 genotype A77 developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
9.6 99.1 GSM138137 Genotype Domain developing seed at 5 days after anthesis, biological rep3 location SB GSE5937 Wheat expression level polymorphism study parental genotypes 2 biological reps from SB location
9.6 99.1 GSM111232 genotype H8 developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
9.3 99.0 GSM138147 genotype G13 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
8.5 98.9 GSM111199 genotype A77 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.49 9e-65 246 TaAffx.5261.1.S1_at CA717176 - - 1e+1 At4g37830 cytochrome c oxidase-related C.G. S.X.
0.06 4e-2 38 Ta.18785.1.S1_at CA642153 - - 2e+0 At2g19790 clathrin adaptor complex small chain family protein C.G. S.X.
0.05 6e-1 34 TaAffx.32317.1.S1_at CA597055 - - 1e-6 At2g25070 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.04 2e+0 32 TaAffx.84162.1.S1_at CA643587 - - 7e-2 At3g03100 NADH:ubiquinone oxidoreductase family protein C.G. S.X.
0.04 2e+0 32 TaAffx.84162.1.S1_x_at CA643587 - - 7e-2 At3g03100 NADH:ubiquinone oxidoreductase family protein C.G. S.X.
0.04 2e+0 32 TaAffx.58260.1.S1_at CA621111 - - 1e-6 At3g52930 fructose-bisphosphate aldolase, putative C.G. S.X.
0.06 2e+0 32 TaAffx.51521.1.S1_at CA724011 - - 2e+1 At5g51890 peroxidase C.G. S.X.
0.04 2e+0 32 TaAffx.23770.1.S1_at CA730792 - - 2e-1 At3g51520 diacylglycerol acyltransferase family C.G. S.X.
0.05 2e+0 32 TaAffx.112464.1.S1_at CA623716 - - 3e+0 At4g16930 disease resistance protein (TIR-NBS-LRR class), putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 9e+0 30 Arabidopsis thaliana At4g22753 828373 SMO1-3 (STEROL 4-ALPHA METHYL OXIDASE 1-3) Encodes a member of the SMO1 family of sterol 4alpha-methyl oxidases. - - - C.G. S.X.
0.04 3e+0 32 Glycine max PsAffx.psZO005iH01r_at PsAffx.psZO005iH01r - - 9e-1 At4g38130 HD1 (HISTONE DEACETYLASE 1) C.G. S.X.
0.04 5e+0 30 Hordeum vulgare HM09B02r_s_at HM09B02r - - 4e+0 At3g01960 unknown protein C.G. S.X.
0.05 1e+0 34 Oryza sativa Os06g0542100 AK111086.1 - Hypothetical protein 1e+0 At5g42330 unknown protein C.G. S.X.
0.05 3e+0 32 Populus trichocarpa PtpAffx.211501.1.S1_s_at pmrna22538 NAC domain protein, IPR003441 /// NAC domain protein, IPR003441 - 5e-2 At4g36160 ANAC076 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 76) C.G. S.X.
0.04 3e+0 30 Vitis vinifera 1614943_at CF211105 hypothetical protein LOC100247170 - 2e-2 At1g58120 unknown protein C.G. S.X.
0.04 4e+0 30 Zea mays Zm.6849.1.A1_at AI065467 hypothetical protein LOC100275227 - 4e+0 At5g01380 transcription factor C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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