Gene omics information

Query gene ID	TaAffx.78861.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	79.2	TaAffx.78861.1.S1_at	CA725589	-	-	1e+1	At3g28070	nodulin MtN21 family protein	S.X.	H.G.	Please select
0.63	83.1	TaAffx.5596.1.S1_at	CA705635	-	-	3e+0	At1g12250	thylakoid lumenal protein-related	S.X.	H.G.	Please select
0.57	79.2	TaAffx.3664.1.S1_at	CD876496	-	-	2e+0	At2g47710	universal stress protein (USP) family protein	S.X.	H.G.	Please select
0.56	78.6	TaAffx.58638.1.S1_at	CA617698	-	-	4e+0	At1g12805	nucleotide binding	S.X.	H.G.	Please select
0.55	76.8	TaAffx.112158.1.S1_at	CA626538	-	-	2e+1	At3g28590	unknown protein	S.X.	H.G.	Please select
0.53	74.9	TaAffx.55653.1.S1_at	CA663094	-	-	1e+1	At4g20030	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.50	72.4	TaAffx.79437.1.S1_at	CA715704	-	-	3e+0	At1g02680	TAF13 (TBP-ASSOCIATED FACTOR 13)	S.X.	H.G.	Please select
0.38	54.7	Ta.3911.2.S1_s_at	CA604151	-	-	4e+0	At2g44290	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.6	99.4	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
11.6	99.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.8	99.1	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.5	99.1	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.6	98.7	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.8	98.4	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.4	98.2	GSM298063	Crown tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.6	97.8	GSM298064	Crown tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.1	97.5	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.9	97.3	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-1	36	TaAffx.85307.1.S1_at	CA616740	-	-	4e+0	At5g14345	copper ion binding / electron carrier	C.G.	S.X.	Please select
0.04	2e-1	36	TaAffx.23596.1.S1_at	CA732895	-	-	7e-2	At1g70210	CYCD1	C.G.	S.X.	Please select
0.02	8e-1	34	Ta.7025.1.S1_at	CD452776	-	-	4e-6	At2g45270	glycoprotease M22 family protein	C.G.	S.X.	Please select
0.03	3e+0	32	TaAffx.83872.1.S1_at	CA649240	-	-	1e+0	At1g68350	unknown protein	C.G.	S.X.	Please select
0.03	3e+0	32	TaAffx.81978.1.S1_at	CA679472	-	-	3e-1	At1g05300	ZIP5	C.G.	S.X.	Please select
0.04	3e+0	32	TaAffx.59216.1.S1_at	CA606004	-	-	3e+0	At3g45600	TET3 (TETRASPANIN3)	C.G.	S.X.	Please select
0.03	3e+0	32	TaAffx.117333.1.S1_at	BQ606479	-	-	1e+0	At1g44830	AP2 domain-containing transcription factor TINY, putative	C.G.	S.X.	Please select
0.04	3e+0	32	TaAffx.114153.1.S1_at	CA597784	-	-	9e-1	At5g40040	60S acidic ribosomal protein P2 (RPP2E)	C.G.	S.X.	Please select
0.03	3e+0	32	Ta.480.1.S1_at	BQ169416	-	-	4e-1	At2g16340	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+1	30	Arabidopsis thaliana	At3g28070	822431	nodulin MtN21 family protein	F:molecular_function unknown;P:biological_process unknown;C:membrane;PBOAMF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e+0	34	Glycine max	PsAffx.C608000004_at	PsAffx.C608000004	-	-	3e-1	At5g04190	PKS4 (phytochrome kinase substrate 4)	C.G.	S.X.	Please select
0.05	4e-1	34	Hordeum vulgare	Contig17791_at	Contig17791	-	-	2e-1	At1g67860	unknown protein	C.G.	S.X.	Please select
0.05	2e+0	34	Oryza sativa	OsAffx.23673.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+1	30	Populus trichocarpa	PtpAffx.210817.1.S1_at	pmrna21234	hypothetical protein	-	3e-8	At1g16470	PAB1 (PROTEASOME SUBUNIT PAB1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	9e-1	32	Vitis vinifera	1622127_at	CK138186.1	hypothetical LOC100262546	-	9e-1	At3g50070	CYCD3	C.G.	S.X.	Please select
0.03	5e+0	30	Zea mays	Zm.6325.1.A1_at	CF625024	snRK1-interacting protein 1	-	6e+0	At5g24355	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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