CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID TaAffx.78545.2.S1_at

Gene name WRKY39 transcription factor

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.96 99.3 TaAffx.78545.2.S1_at CA627335 WRKY39 transcription factor - 4e-3 At4g33780 - S.X. H.G.
0.65 83.9 TaAffx.25126.1.S1_at CA705922 - - 3e+0 At3g17460 PHD finger family protein S.X. H.G.
0.56 78.6 TaAffx.57968.1.S1_at CA623483 - - 4e-3 At2g42910 ribose-phosphate pyrophosphokinase 4 / phosphoribosyl diphosphate synthetase 4 (PRS4) S.X. H.G.
0.53 74.9 TaAffx.49612.2.A1_at CA498714 - - 5e-1 At1g06980 unknown protein S.X. H.G.
0.51 73.0 TaAffx.34241.2.S1_x_at CA722326 - - 4e+0 At5g51960 - S.X. H.G.
0.51 73.0 TaAffx.34241.2.S1_at CA722326 - - 4e+0 At5g51960 - S.X. H.G.
0.50 72.4 Ta.14146.3.S1_x_at CA697368 - - 2e+1 At5g24313 unknown protein S.X. H.G.
0.49 69.7 TaAffx.58638.1.S1_at CA617698 - - 4e+0 At1g12805 nucleotide binding S.X. H.G.
0.49 69.7 TaAffx.56155.1.S1_at CA656564 - - 1e+1 At5g26070 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.47 67.9 TaAffx.38268.1.A1_at BJ242361 - - 1e+0 At1g21326 VQ motif-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.9 99.7 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
10.9 99.3 GSM111233 genotype H8 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
7.7 98.7 GSM298090 Leaf tissue of Solstice at 5 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
6.3 98.2 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.3 98.2 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
5.8 97.9 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.7 97.1 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8 96.0 GSM138163 genotype E5 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.8 96.0 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6 95.6 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1063 TaAffx.78545.2.S1_s_at CA627335 WRKY39 transcription factor - 4e-3 At4g33780 - C.G. S.X.
0.79 2e-171 601 TaAffx.78545.4.S1_at CA626125 - - 4e-3 At4g33780 - C.G. S.X.
0.34 3e-44 178 TaAffx.78545.1.S1_s_at CK161752 - - 2e-1 At1g06475 unknown protein C.G. S.X.
0.21 2e-33 143 Ta.4678.2.S1_at CK163938 WRKY8 transcription factor - 1e-2 At5g07600 oleosin / glycine-rich protein C.G. S.X.
0.17 1e-28 127 Ta.4678.1.S1_x_at CD935984 WRKY8 transcription factor - 3e+0 At5g07100 WRKY26 C.G. S.X.
0.17 1e-28 127 Ta.4678.1.S1_at CD935984 WRKY8 transcription factor - 3e+0 At5g07100 WRKY26 C.G. S.X.
0.08 3e-4 46 Ta.5433.1.S1_a_at CA623872 - - 8e-16 At1g62300 WRKY6 C.G. S.X.
0.08 3e-4 46 Ta.5433.1.S1_x_at CA623872 - - 8e-16 At1g62300 WRKY6 C.G. S.X.
0.03 3e-1 36 TaAffx.109191.1.S1_x_at BQ168959 WRKY transcription factor - 5e-1 At5g44130 FLA13 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13 PRECURSOR) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e-3 42 Arabidopsis thaliana At4g33780 829520 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P - - - C.G. S.X.
0.06 6e-3 42 Glycine max GmaAffx.14300.1.S1_at BM108156 WRKY36 protein - 2e-7 At1g62300 WRKY6 C.G. S.X.
0.35 3e-70 264 Hordeum vulgare Contig4387_at Contig4387 - - 6e-1 At5g04160 phosphate translocator-related C.G. S.X.
0.21 7e-59 228 Oryza sativa Os06g0649000 AK106282.1 - The start codon is not identified. 7e-4 At1g80840 WRKY40 C.G. S.X.
0.07 1e-1 38 Populus trichocarpa PtpAffx.5224.2.A1_at CV258799 hypothetical protein - 1e-10 At2g25000 WRKY60 C.G. S.X.
0.07 1e-6 52 Vitis vinifera 1614806_s_at CB343751 hypothetical protein LOC100264507 - 2e-4 At2g25000 WRKY60 C.G. S.X.
0.29 6e-53 206 Zea mays Zm.8326.1.A1_at BM073693 - - 1e+0 At5g07100 WRKY26 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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