Gene omics information

Query gene ID	TaAffx.78517.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.3	TaAffx.78517.1.S1_at	CA731451	-	-	4e+0	At2g25720	unknown protein	S.X.	H.G.	Please select
0.83	93.4	TaAffx.73323.1.S1_at	CA713945	-	-	3e+0	At5g45870	Bet v I allergen family protein	S.X.	H.G.	Please select
0.67	86.3	TaAffx.115939.2.S1_at	CA677586	-	-	7e-2	At1g30800	-	S.X.	H.G.	Please select
0.60	81.0	Ta.30411.1.S1_at	CK209297	-	-	5e+0	At5g62280	unknown protein	S.X.	H.G.	Please select
0.53	74.9	TaAffx.118620.1.S1_at	BJ316617	-	-	1e+0	At2g31560	unknown protein	S.X.	H.G.	Please select
0.40	58.4	TaAffx.3664.1.S1_at	CD876496	-	-	2e+0	At2g47710	universal stress protein (USP) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.5	99.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.3	99.2	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.6	99.1	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.1	98.8	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.9	98.4	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.9	98.0	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.6	97.8	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM143524	Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.1	96.4	GSM143507	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.8	96.0	GSM324490	Si+ B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-2	40	Ta.4675.1.S1_at	BJ274667	-	-	4e-2	At4g39580	kelch repeat-containing F-box family protein	C.G.	S.X.	Please select
0.03	7e-2	38	Ta.9736.1.S1_s_at	CA611997	-	-	6e+0	At4g39200	40S ribosomal protein S25 (RPS25E)	C.G.	S.X.	Please select
0.04	7e-2	38	Ta.9385.2.S1_at	CA646826	-	-	2e-1	At1g30473	metal ion binding	C.G.	S.X.	Please select
0.04	7e-2	38	Ta.9385.2.S1_x_at	CA646826	-	-	2e-1	At1g30473	metal ion binding	C.G.	S.X.	Please select
0.02	7e-2	38	Ta.30520.1.S1_at	CA635767	-	-	8e-20	At1g55360	unknown protein	C.G.	S.X.	Please select
0.04	3e-1	36	TaAffx.23624.1.S1_at	CA732632	-	-	3e+0	At4g22830	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	36	TaAffx.122816.1.S1_at	BQ842238	-	-	2e-1	At4g17650	aromatic-rich family protein	C.G.	S.X.	Please select
0.04	3e-1	36	Ta.7432.2.S1_at	CA630259	-	-	7e-2	At5g40080	60S ribosomal protein-related	C.G.	S.X.	Please select
0.03	3e-1	36	Ta.6116.2.S1_at	BJ222394	-	-	3e-1	At3g51640	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e+0	32	Arabidopsis thaliana	At2g25720	817113	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	HgAffx.7372.1.A1_at	CK350695	-	-	1e+0	At5g62650	unknown protein	C.G.	S.X.	Please select
0.22	1e-88	325	Hordeum vulgare	Contig16060_at	Contig16060	-	-	4e-2	At2g42280	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.25	2e-46	186	Oryza sativa	Os02g0671200	CB645317	-	Conserved hypothetical protein	5e+0	At2g34910	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.150078.1.S1_s_at	BU880077	hypothetical protein	-	4e-31	At1g09340	CRB (CHLOROPLAST RNA BINDING)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	32	Vitis vinifera	1611051_at	CB975150	-	-	2e-1	At5g20160	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	C.G.	S.X.	Please select
0.03	5e-1	34	Zea mays	Zm.9637.1.A1_at	BM334419	-	-	4e-1	At1g31060	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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