CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID TaAffx.78428.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.56 78.6 TaAffx.78428.1.S1_at CA732797 - - 1e+0 At4g15610 integral membrane family protein S.X. H.G.
0.75 89.8 TaAffx.82721.1.S1_at CA668034 - - 3e+1 At4g20780 calcium-binding protein, putative S.X. H.G.
0.60 81.0 TaAffx.110652.1.S1_at CA656567 - - 1e-2 At2g23690 unknown protein S.X. H.G.
0.53 74.9 TaAffx.78822.1.S1_at CA726823 - - 1e+0 At5g01075 beta-galactosidase S.X. H.G.
0.53 74.9 TaAffx.114049.1.S1_at CA599641 - - 5e+0 At4g33560 unknown protein S.X. H.G.
0.50 72.4 TaAffx.65688.1.S1_x_at BJ232502 - - 2e+1 At3g02480 ABA-responsive protein-related S.X. H.G.
0.48 69.0 TaAffx.110167.1.S1_at CA662870 - - 4e+0 At4g14440 HCD1 (3-HYDROXYACYL-COA DEHYDRATASE 1) S.X. H.G.
0.46 66.8 TaAffx.132656.2.S1_at CA600729 - - 1e+0 At1g76500 SOB3 (SUPPRESSOR OF PHYB-4#3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
22.9 99.8 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
17.1 99.6 GSM111233 genotype H8 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
14.6 99.5 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
12.8 99.4 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
11.5 99.3 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.4 99.2 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.1 99.2 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
8.5 98.9 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.8 98.4 GSM298090 Leaf tissue of Solstice at 5 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
6.5 98.3 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-1 36 TaAffx.81810.1.S1_at CA681627 - - 2e+1 At5g08710 regulator of chromosome condensation (RCC1) family protein / UVB-resistance protein-related C.G. S.X.
0.03 3e-1 36 Ta.11949.1.A1_at BQ171132 - - 6e-1 At2g31940 unknown protein C.G. S.X.
0.03 1e+0 34 TaAffx.92456.1.A1_at BJ265162 - - 1e+0 At2g29020 Rab5-interacting family protein C.G. S.X.
0.03 1e+0 34 TaAffx.55598.1.S1_at CA663839 - - 1e+0 At5g54110 ATMAMI (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED MANNITOL-INDUCED) C.G. S.X.
0.01 1e+0 34 Ta.717.1.S1_at BJ308303 - - 3e-28 At4g20360 ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B) C.G. S.X.
0.02 1e+0 34 Ta.27901.1.A1_at CD887208 - - 7e+0 At5g64080 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.03 1e+0 34 Ta.26370.1.A1_at CD491128 - - 3e-8 At3g13200 EMB2769 (EMBRYO DEFECTIVE 2769) C.G. S.X.
0.02 1e+0 34 Ta.25389.1.S1_at BT009624.1 - - 4e-2 At3g14020 NF-YA6 (NUCLEAR FACTOR Y, SUBUNIT A6) C.G. S.X.
0.03 1e+0 34 Ta.11395.1.S1_at BQ170007 - - 3e-1 At1g60300 apical meristem formation protein-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 34 Arabidopsis thaliana At4g15610 827238 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.03 4e-1 36 Glycine max Gma.13217.1.S1_at CD391191 - - 3e-1 At3g50460 HR2 (HOMOLOG OF RPW8 2) C.G. S.X.
0.03 1e-1 36 Hordeum vulgare Contig15998_at Contig15998 - - 4e-1 At1g58380 XW6 C.G. S.X.
0.03 1e-1 38 Oryza sativa Os11g0197500 AK120960.1 - Hypothetical protein 4e-1 At5g41401 unknown protein C.G. S.X.
0.04 1e-1 38 Populus trichocarpa PtpAffx.217617.1.S1_x_at pmrna32957 hypothetical protein - 6e-1 At3g46940 deoxyuridine 5'-triphosphate nucleotidohydrolase family C.G. S.X.
0.03 8e-2 36 Vitis vinifera 1619972_at CF511808 hypothetical protein LOC100263609 - 2e-1 At5g56770 unknown protein C.G. S.X.
0.03 1e-1 36 Zea mays Zm.13575.1.A1_at AY107905.1 hypothetical protein LOC100276139 - 9e-8 At3g57785 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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