Gene omics information

Query gene ID	TaAffx.78296.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	TaAffx.78296.1.S1_at	CA734700	-	-	8e-1	At5g45700	NLI interacting factor (NIF) family protein	S.X.	H.G.	Please select
0.73	89.1	TaAffx.15154.2.S1_s_at	CA744371	-	-	9e-1	At3g62030	peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4)	S.X.	H.G.	Please select
0.57	79.2	TaAffx.8084.2.S1_at	CA742580	-	-	3e-2	At5g02480	-	S.X.	H.G.	Please select
0.55	76.8	Ta.28190.2.S1_a_at	CA654134	-	-	7e-2	At5g07620	protein kinase family protein	S.X.	H.G.	Please select
0.50	72.4	TaAffx.109318.1.S1_at	CA677119	-	-	4e+0	At2g14560	LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA)	S.X.	H.G.	Please select
0.50	72.4	Ta.13274.2.A1_at	CA613778	-	-	7e-2	At5g05360	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
34.9	99.9	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
16.5	99.6	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
14.8	99.5	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
12.0	99.4	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.6	99.1	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.9	98.7	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.6	98.3	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
5.3	97.6	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.9	96.1	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.52	4e-166	583	Ta.3949.2.S1_at	CK206483	-	-	2e+0	At5g45700	NLI interacting factor (NIF) family protein	C.G.	S.X.	Please select
0.29	6e-45	180	Ta.3949.3.S1_at	CA646865	-	-	2e+0	At5g45700	NLI interacting factor (NIF) family protein	C.G.	S.X.	Please select
0.17	2e-14	79	Ta.24452.1.S1_at	CA651544	-	-	4e+0	At5g37280	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.04	8e-1	34	TaAffx.121691.2.S1_at	BJ281972	-	-	2e-9	At5g10520	RBK1 (Rop Binding protein Kinases 1)	C.G.	S.X.	Please select
0.02	8e-1	34	Ta.13197.2.S1_at	BQ166333	-	-	9e+0	At5g64330	NPH3 (NON-PHOTOTROPIC HYPOCOTYL 3)	C.G.	S.X.	Please select
0.02	3e+0	32	TaAffx.93995.1.S1_at	CD881721	-	-	3e+0	At2g44870	unknown protein	C.G.	S.X.	Please select
0.04	3e+0	32	Ta.4124.3.S1_at	BJ259450	-	-	4e+0	At3g57670	NTT (NO TRANSMITTING TRACT)	C.G.	S.X.	Please select
0.03	3e+0	32	Ta.4097.1.A1_at	CD454538	-	-	1e+0	At4g17010	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	32	Ta.25594.1.S1_at	BJ262129	-	-	2e-5	At1g25280	AtTLP10 (TUBBY LIKE PROTEIN 10)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	8e-1	34	Arabidopsis thaliana	At5g45700	834609	NLI interacting factor (NIF) family protein	F:phosphatase activity;P:unknown;C:unknown;MOFPVB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e+0	34	Glycine max	Gma.241.1.S1_at	BI945674	-	-	1e+1	At3g04735	RALFL21 (RALF-LIKE 21)	C.G.	S.X.	Please select
0.16	3e-23	107	Hordeum vulgare	HF01A04w_s_at	HF01A04w	-	-	1e+0	At5g45700	NLI interacting factor (NIF) family protein	C.G.	S.X.	Please select
0.02	2e+0	34	Oryza sativa	Os01g0625300	AY344495.1	-	Heat shock transcription factor 31 (Fragment)	5e-5	At2g41690	AT-HSFB3	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-1	36	Populus trichocarpa	PtpAffx.9862.1.A1_at	DN486589	hypothetical protein	-	2e-1	At1g67210	proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	4e+0	30	Vitis vinifera	1622211_at	CD714205	-	-	1e+0	At5g35960	protein kinase, putative	C.G.	S.X.	Please select
0.03	6e+0	30	Zea mays	Zm.16228.1.S1_a_at	BU197473	hypothetical protein LOC100275186	-	2e-2	At4g17310	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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