CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID TaAffx.77639.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.2 TaAffx.77639.1.S1_at CA744867 - - 1e-3 At4g23180 CRK10 (CYSTEINE-RICH RLK10) S.X. H.G.
0.36 51.9 Ta.21581.1.S1_at CA696527 - - 4e+0 At2g36460 fructose-bisphosphate aldolase, putative S.X. H.G.
0.27 35.6 Ta.26652.1.A1_at CD491481 - - 1e-3 At1g36050 unknown protein S.X. H.G.
0.21 25.5 TaAffx.24121.1.S1_at CA724779 - - 2e-1 At1g11590 pectin methylesterase, putative S.X. H.G.
0.13 14.6 Ta.6762.3.S1_at BJ246546 - - 1e+0 At5g61490 - S.X. H.G.
0.07 8.6 Ta.974.2.S1_at CA747351 - - 5e+0 At3g28956 catalytic/ nucleotide binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
27.7 99.8 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
27.6 99.8 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
22.9 99.8 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
22.9 99.8 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
10.3 99.2 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.1 99.0 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.2 98.8 GSM246391 SB62_Stem_ rep2_at anthesis GSE9767 Genotypic differences in water soluble carbohydrate metabolism in stem
7.8 98.7 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.9 98.4 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
6.7 98.4 GSM250908 Tc_7dpi_inoculated_rep2 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 2e-17 89 Ta.11643.1.A1_at BQ170514 - - 2e-3 At4g04500 protein kinase family protein C.G. S.X.
0.06 5e-9 61 TaAffx.104601.1.A1_at CA747194 - - 3e-1 At2g47780 rubber elongation factor (REF) protein-related C.G. S.X.
0.05 8e-8 57 TaAffx.4340.1.S1_at CA744492 - - 1e+0 At3g49850 TRB3 (TELOMERE REPEAT BINDING FACTOR 3) C.G. S.X.
0.07 8e-8 57 Ta.632.2.S1_a_at CA736429 - - 6e-1 At1g75560 zinc knuckle (CCHC-type) family protein C.G. S.X.
0.07 8e-8 57 Ta.632.2.S1_x_at CA736429 - - 6e-1 At1g75560 zinc knuckle (CCHC-type) family protein C.G. S.X.
0.05 3e-7 56 TaAffx.95953.1.S1_at CA735492 - - 4e+0 At5g36700 PGLP1 (2-PHOSPHOGLYCOLATE PHOSPHATASE 1) C.G. S.X.
0.08 3e-7 56 TaAffx.78050.1.S1_at CA738210 - - 5e+0 At3g07590 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative C.G. S.X.
0.07 3e-7 56 TaAffx.50719.1.S1_at CA736517 - - 2e+0 At3g05860 MADS-box protein (AGL45) C.G. S.X.
0.05 3e-7 56 TaAffx.50026.2.S1_at CA745616 - - 4e+0 At5g22430 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 1e-3 44 Arabidopsis thaliana At4g23180 828417 CRK10 (CYSTEINE-RICH RLK10) Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) - - - C.G. S.X.
0.15 4e-10 65 Glycine max GmaAffx.64035.1.S1_at BI497646 - - 7e-12 At4g04540 protein kinase family protein C.G. S.X.
0.18 5e-29 127 Hordeum vulgare Contig25378_at Contig25378 - - 9e-18 At4g21390 B120 C.G. S.X.
0.25 2e-99 363 Oryza sativa Os04g0631800 AF403126.1 - Receptor-like protein kinase 5 1e-6 At3g45860 receptor-like protein kinase, putative C.G. S.X.
0.14 2e-6 54 Populus trichocarpa PtpAffx.225434.1.S1_x_at pmrna44781 hypothetical protein - 2e-13 At1g11300 ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding C.G. S.X.
0.06 1e-6 52 Vitis vinifera 1611358_at CD006705 - - 9e-8 At1g61370 S-locus lectin protein kinase family protein C.G. S.X.
0.04 1e-4 46 Zea mays Zm.2984.2.A1_at CF059668 - - 3e+0 At5g39520 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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