Gene omics information

Query gene ID TaAffx.77390.1.S1_at
Gene name histone deacetylase
Organism Triticum aestivum


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9198.2TaAffx.77390.1.S1_atCD893386histone deacetylase-1e-19At5g63110HDA6 (HISTONE DEACETYLASE 6)S.X.H.G.
0.5576.8TaAffx.120650.1.S1_s_atBG608388--2e+0At2g40080ELF4 (EARLY FLOWERING 4)S.X.H.G.
0.5072.4Ta.1178.2.S1_atBG909050--1e-1At2g07775unknown proteinS.X.H.G.
0.5072.4Ta.2207.2.S1_a_atCA612248--5e-25At5g05780RPN8A (RP NON-ATPASE SUBUNIT 8A)S.X.H.G.
0.4464.5Ta.7274.3.S1_a_atAJ612375--1e-3At1g79650RAD23S.X.H.G.
0.3346.9Ta.7506.2.S1_a_atBJ267303--5e-15At1g27650ATU2AF35AS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
7.598.6GSM298084Crown tissue of Solstice at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivars
6.698.3GSM298085Crown tissue of Solstice at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivars
6.598.3GSM298086Crown tissue of Solstice at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivars
5.697.8GSM298087Crown tissue of Solstice at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivars
5.397.6GSM298063Crown tissue of Harnesk at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivars
5.197.5GSM298083Crown tissue of Solstice at 3 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivars
4.997.3GSM298073Crown tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivars
4.697.0GSM298062Crown tissue of Harnesk at 5 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivars
4.596.9GSM298060Crown tissue of Harnesk at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivars
4.496.8GSM298061Crown tissue of Harnesk at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivars
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.161e-38161Ta.27150.1.S1_atCK162660--1e-56At4g38130HD1 (HISTONE DEACETYLASE 1)C.G.S.X.
0.237e-31135Ta.23826.1.S1_atBT009381.1Histone deacetylase HDAC3-3e-41At4g38130HD1 (HISTONE DEACETYLASE 1)C.G.S.X.
0.025e-136TaAffx.66003.1.S1_atBJ219731--2e+0At3g12730myb family transcription factorC.G.S.X.
0.035e-136TaAffx.12494.1.S1_atBJ259359--1e-3At3g63510FAD binding / catalytic/ tRNA dihydrouridine synthaseC.G.S.X.
0.035e-136TaAffx.119314.1.S1_atBJ277629--3e+0At1g0721030S ribosomal protein S18 familyC.G.S.X.
0.035e-136Ta.7645.3.S1_atCA594002--7e-2At1g05420OFP12 (OVATE FAMILY PROTEIN 12)C.G.S.X.
0.035e-136Ta.7645.3.S1_x_atCA594002--7e-2At1g05420OFP12 (OVATE FAMILY PROTEIN 12)C.G.S.X.
0.015e-136Ta.3057.1.S1_atBJ214808--3e+0At1g04800glycine-rich proteinC.G.S.X.
0.022e+034TaAffx.7403.1.S1_atCA659746--4e+0At3g10780emp24/gp25L/p24 family proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.211e-1997Arabidopsis thalianaAt5g63110836431HDA6 (HISTONE DEACETYLASE 6)RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing.---C.G.S.X.
0.551e-69264Glycine maxGmaAffx.58612.1.S1_atBM954406--6e-19At5g63110HDA6 (HISTONE DEACETYLASE 6)C.G.S.X.
0.263e-22105Hordeum vulgareContig5301_atContig5301--1e-43At4g38130HD1 (HISTONE DEACETYLASE 1)C.G.S.X.
0.550942Oryza sativaOs08g0344100AK111861.1-Histone deacetylase2e-14At5g63110HDA6 (HISTONE DEACETYLASE 6)C.G.S.X.
0.082e-138Populus trichocarpaPtpAffx.6033.1.S1_atCA932145histone deacetylase-2e-91At4g38130HD1 (HISTONE DEACETYLASE 1)C.G.S.X.
0.049e-650Vitis vinifera1620045_atCF413997similar to HDA6 (HISTONE DEACETYLASE 6); histone deacetylase-4e-38At5g63110HDA6 (HISTONE DEACETYLASE 6)C.G.S.X.
0.530791Zea maysZm.419.1.S1_atAF045473.1histone deacetylase-8e-26At5g63110HDA6 (HISTONE DEACETYLASE 6)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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