Gene omics information

Query gene ID	TaAffx.7419.1.A1_x_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	72.4	TaAffx.7419.1.A1_x_at	CK216646	-	-	2e+0	At5g18690	AGP25 (ARABINOGALACTAN PROTEINS 25)	S.X.	H.G.	Please select
0.75	89.8	Ta.581.2.S1_a_at	CD862705	hypothetical LOC543355	-	9e-3	At2g35370	GDCH	S.X.	H.G.	Please select
0.67	86.3	Ta.2392.1.S1_x_at	CA623973	-	-	2e+0	At3g07450	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.67	86.3	Ta.581.1.S1_at	AY123417.1	hypothetical LOC543355	-	1e-7	At1g32470	glycine cleavage system H protein, mitochondrial, putative	S.X.	H.G.	Please select
0.59	79.8	Ta.2402.1.S1_a_at	CA722522	-	-	7e-12	At3g54890	LHCA1	S.X.	H.G.	Please select
0.53	74.9	Ta.3916.2.S1_x_at	CK213268	-	-	4e-1	At1g10960	ATFD1 (FERREDOXIN 1)	S.X.	H.G.	Please select
0.44	64.5	Ta.4255.1.S1_x_at	BE591014	-	-	7e-3	At1g75690	chaperone protein dnaJ-related	S.X.	H.G.	Please select
0.41	59.6	Ta.3581.3.S1_x_at	CA598998	-	-	4e-7	At1g31330	PSAF (photosystem I subunit F)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.1	99.4	GSM298077	Leaf tissue of Solstice at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
10.3	99.2	GSM298078	Leaf tissue of Solstice at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
9.5	99.1	GSM298066	Leaf tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
8.8	98.9	GSM298068	Leaf tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
8.0	98.8	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
7.9	98.7	GSM298079	Leaf tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.9	98.4	GSM298089	Leaf tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.6	98.3	GSM298065	Leaf tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.4	98.2	GSM298080	Leaf tissue of Solstice at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.0	98.0	GSM298053	Leaf tissue of Harnesk at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.41	8e-173	607	TaAffx.7419.2.A1_at	CA659442	-	-	1e-9	At2g01290	ribose-5-phosphate isomerase	C.G.	S.X.	Please select
0.47	3e-147	521	Ta.27795.1.S1_at	CA736709	-	-	7e-1	At3g55430	glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative	C.G.	S.X.	Please select
0.50	5e-146	517	Ta.22295.1.A1_at	CA705949	-	-	1e+0	At2g37000	TCP family transcription factor, putative	C.G.	S.X.	Please select
0.40	4e-82	305	Ta.17793.1.A1_at	CA624381	-	-	4e+0	At5g25990	unknown protein	C.G.	S.X.	Please select
0.03	9e-3	42	Ta.17077.1.S1_at	CA617367	-	-	3e+0	At1g65484	unknown protein	C.G.	S.X.	Please select
0.02	4e-2	40	TaAffx.92719.1.S1_at	BJ245187	-	-	5e+0	At5g59880	ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)	C.G.	S.X.	Please select
0.02	1e-1	38	TaAffx.31368.1.S1_at	CA617042	-	-	2e-2	At5g18430	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select
0.02	6e-1	36	TaAffx.65293.1.A1_at	BJ252179	-	-	1e+0	At2g24590	splicing factor, putative	C.G.	S.X.	Please select
0.02	6e-1	36	TaAffx.12831.1.S1_at	BJ229300	-	-	6e-3	At3g46640	PCL1 (PHYTOCLOCK 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At5g18690	831987	AGP25 (ARABINOGALACTAN PROTEINS 25)	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PMOVFB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.24	3e-25	117	Glycine max	Gma.17711.1.S1_at	CD394545	-	-	1e-7	At2g01290	ribose-5-phosphate isomerase	C.G.	S.X.	Please select
0.66	0	850	Hordeum vulgare	Contig6341_s_at	Contig6341	-	-	1e-11	At2g01290	ribose-5-phosphate isomerase	C.G.	S.X.	Please select
0.54	9e-134	478	Oryza sativa	Os07g0176900	AK060861.1	-	Ribose-5-phosphate isomerase precursor (EC5.3.1.6)	4e-5	At2g01290	ribose-5-phosphate isomerase	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e+0	34	Populus trichocarpa	PtpAffx.111716.1.S1_at	CK106058	-	-	6e-9	At2g19110	HMA4	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	6e-1	34	Vitis vinifera	1618532_at	CF512951	-	-	4e+0	At4g04810	methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	C.G.	S.X.	Please select
0.42	2e-51	202	Zea mays	Zm.3024.1.A1_at	BM336593	ribose-5-phosphate isomerase	-	6e-3	At3g04790	ribose 5-phosphate isomerase-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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