CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID TaAffx.72471.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.70 87.2 TaAffx.72471.1.S1_at CA725188 - - 1e+0 At2g27940 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.74 89.4 TaAffx.78823.1.S1_at CA726815 - - 4e+0 At5g26840 unknown protein S.X. H.G.
0.70 87.2 TaAffx.52385.1.S1_at CA708316 - - 4e+0 At1g05930 DNA binding S.X. H.G.
0.67 86.3 Ta.25810.1.A1_at CD374040 - - 1e+0 At5g10310 unknown protein S.X. H.G.
0.67 86.3 Ta.7698.3.S1_at CA636022 - - 2e+1 At5g60615 - S.X. H.G.
0.64 83.6 Ta.17218.1.S1_at CA618872 - - 2e+1 At5g08260 scpl35 (serine carboxypeptidase-like 35) S.X. H.G.
0.61 82.0 Ta.24307.1.A1_at AL822297 cytokinin dehydrogenase - 1e+0 At2g03570 unknown protein S.X. H.G.
0.50 72.4 TaAffx.52324.1.S1_at CA709316 - - 1e+0 At2g21220 auxin-responsive protein, putative S.X. H.G.
0.47 67.9 TaAffx.113686.2.S1_at CA607016 - - 2e+1 At3g56130 biotin/lipoyl attachment domain-containing protein S.X. H.G.
0.45 65.2 TaAffx.55852.1.S1_at CA660360 - - 6e-1 At1g70895 CLE17 (CLAVATA3/ESR-RELATED 17) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
123.9 100.0 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
22.9 99.8 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
13.5 99.5 GSM111147 genotype RL4452 developing seed at 5 days after anthesis, biological rep2 GSE4929 wheat expression level polymorphism study parental genotypes 2 biological reps
12.5 99.4 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
9.5 99.1 GSM324494 Si+ B+ rep2 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
6.6 98.3 GSM298090 Leaf tissue of Solstice at 5 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
4.7 97.1 GSM298069 Leaf tissue of Paragon at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.5 96.9 GSM111233 genotype H8 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
3.6 95.6 GSM138193 genotype B33 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.3 95.0 GSM298054 Leaf tissue of Harnesk at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 7e-2 38 TaAffx.105444.1.S1_at CA734222 - - 1e+0 At4g00220 JLO (JAGGED LATERAL ORGANS) C.G. S.X.
0.03 3e-1 36 TaAffx.82906.1.S1_at CA665131 - - 2e-2 At5g28640 AN3 (ANGUSTIFOLIA 3) C.G. S.X.
0.04 3e-1 36 TaAffx.67168.1.S1_at BF482621 - - 5e+0 At1g64510 ribosomal protein S6 family protein C.G. S.X.
0.03 3e-1 36 TaAffx.124487.1.A1_at CK212876 - - 3e-1 At5g26790 unknown protein C.G. S.X.
0.03 1e+0 34 TaAffx.85789.1.S1_at CA619606 - - 1e+0 At5g63400 ADK1 (ADENYLATE KINASE 1) C.G. S.X.
0.03 1e+0 34 TaAffx.38660.1.S1_at BJ222566 - - 1e+0 At4g27120 unknown protein C.G. S.X.
0.04 1e+0 34 TaAffx.128418.94.S1_at CA631260 - - 4e+0 At5g60460 sec61beta family protein C.G. S.X.
0.04 1e+0 34 TaAffx.119272.1.S1_at CA677602 - - 9e-1 At1g17330 metal-dependent phosphohydrolase HD domain-containing protein-related C.G. S.X.
0.03 1e+0 34 Ta.25291.1.S1_at CD892353 - - 2e+0 At2g21820 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At2g27940 817338 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV - - - C.G. S.X.
0.03 1e+0 34 Glycine max PsAffx.C381000005_at PsAffx.C381000005 - - 6e-3 At1g66410 CAM4 (calmodulin 4) C.G. S.X.
0.04 3e-2 38 Hordeum vulgare Contig23307_at Contig23307 - - 3e+0 At5g40690 - C.G. S.X.
0.04 1e-1 38 Oryza sativa Os03g0399700 AK120368.1 - Conserved hypothetical protein 1e-1 At4g12380 unknown protein C.G. S.X.
0.03 1e+0 34 Populus trichocarpa PtpAffx.221280.1.S1_at pmrna38049 - - 5e+0 At5g17660 tRNA (guanine-N7-)-methyltransferase C.G. S.X.
0.03 5e+0 30 Vitis vinifera 1607850_at CF214827 hypothetical protein LOC100245395 - 2e-8 At5g44170 - C.G. S.X.
0.03 2e+0 32 Zea mays Zm.17632.1.A1_at CK370036 - - 7e+0 At4g16215 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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