Gene omics information

Query gene ID	TaAffx.72060.1.A1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	TaAffx.72060.1.A1_at	CK207593	-	-	3e-1	At1g67860	unknown protein	S.X.	H.G.	Please select
0.33	46.9	Ta.2270.3.S1_a_at	CA610189	-	-	3e-1	At2g24480	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.13	14.6	Ta.10572.1.S1_at	BJ258058	-	-	4e+0	At4g37240	unknown protein	S.X.	H.G.	Please select
0.09	10.4	Ta.3083.2.A1_at	BJ254365	-	-	4e+0	At3g05602	unknown protein	S.X.	H.G.	Please select
0.06	7.6	TaAffx.80013.1.S1_at	CA704301	-	-	1e+0	At4g18335	unknown protein	S.X.	H.G.	Please select
0.05	6.7	TaAffx.56155.1.S1_at	CA656564	-	-	1e+1	At5g26070	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.9	99.7	GSM298066	Leaf tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
10.6	99.2	GSM143524	Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
8.1	98.8	GSM111203	genotype A10 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
8.0	98.8	GSM324486	Si- B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
7.7	98.7	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.4	98.6	GSM138209	genotype H23 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
7.3	98.6	GSM138185	genotype C25 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.8	98.4	GSM298091	Leaf tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.5	98.3	GSM298077	Leaf tissue of Solstice at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.4	98.2	GSM138166	genotype G30 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	5e-3	42	TaAffx.31521.1.S1_at	CA614198	-	-	3e+0	At2g05510	glycine-rich protein	C.G.	S.X.	Please select
0.03	5e-3	42	Ta.2592.2.S1_s_at	CD874103	-	-	6e+0	At4g19270	unknown protein	C.G.	S.X.	Please select
0.03	2e-2	40	TaAffx.114051.1.S1_at	BJ258146	-	-	6e+0	At3g60370	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	C.G.	S.X.	Please select
0.02	2e-2	40	Ta.9050.1.S1_a_at	CA602170	-	-	9e-13	At2g43750	OASB (O-ACETYLSERINE (THIOL) LYASE B)	C.G.	S.X.	Please select
0.02	2e-2	40	Ta.9050.1.S1_x_at	CA602170	-	-	9e-13	At2g43750	OASB (O-ACETYLSERINE (THIOL) LYASE B)	C.G.	S.X.	Please select
0.04	8e-2	38	TaAffx.23670.1.S1_at	CA732037	-	-	1e+0	At3g29690	transferase-related	C.G.	S.X.	Please select
0.03	8e-2	38	Ta.9929.1.S1_a_at	CA658441	-	-	6e+0	At4g19250	kelch repeat-containing protein	C.G.	S.X.	Please select
0.04	8e-2	38	Ta.28251.1.S1_at	CA679853	-	-	2e+1	At5g45350	proline-rich family protein	C.G.	S.X.	Please select
0.03	8e-2	38	Ta.14436.2.S1_a_at	CA636332	-	-	7e-3	At1g07420	SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-1	36	Arabidopsis thaliana	At1g67860	843113	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	PsAffx.psHB015xO10f_at	PsAffx.psHB015xO10f	-	-	7e-2	At4g19270	unknown protein	C.G.	S.X.	Please select
0.04	1e-2	40	Hordeum vulgare	Contig1555_at	Contig1555	-	-	3e-20	At3g10950	60S ribosomal protein L37a (RPL37aB)	C.G.	S.X.	Please select
0.04	2e-3	44	Oryza sativa	Os01g0320700	AK063226.1	-	Hypothetical protein	1e+0	At5g13340	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	Ptp.1843.2.S1_at	CK093338	hypothetical protein	-	4e-1	At2g35795	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	4e-1	34	Vitis vinifera	1618606_at	CF513941	hypothetical protein LOC100258842	-	5e-37	At5g46290	KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I)	C.G.	S.X.	Please select
0.04	3e-2	38	Zea mays	ZmAffx.967.1.S1_s_at	AI668376	Hypothetical protein LOC100193584	-	1e+1	At5g29613	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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