CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID TaAffx.6885.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.81 92.4 TaAffx.6885.1.S1_at CA671515 - - 2e-27 Atcg00520 - S.X. H.G.
0.81 92.4 Ta.28363.1.A1_x_at BG904047 - - 1e-1 At5g64040 PSAN S.X. H.G.
0.80 92.2 Ta.20429.2.S1_at BE430528 - - 1e-21 At4g38970 fructose-bisphosphate aldolase, putative S.X. H.G.
0.80 92.2 Ta.27761.3.S1_x_at CK213899 - - 5e-9 At1g30380 PSAK (photosystem I subunit K) S.X. H.G.
0.77 90.8 Ta.27660.1.S1_at CK216184 ribulose-1,5-bisphosphate carboxylase activase - 5e-89 At2g39730 RCA (RUBISCO ACTIVASE) S.X. H.G.
0.76 90.1 Ta.1139.1.S1_at BJ263196 - - 5e-14 At4g10340 LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5) S.X. H.G.
0.75 89.8 Ta.27660.1.S1_x_at CK216184 ribulose-1,5-bisphosphate carboxylase activase - 5e-89 At2g39730 RCA (RUBISCO ACTIVASE) S.X. H.G.
0.74 89.4 Ta.28363.1.A1_at BG904047 - - 1e-1 At5g64040 PSAN S.X. H.G.
0.73 89.1 Ta.30795.1.S1_at BG905417 - - 6e-139 At4g33010 AtGLDP1 (Arabidopsis thaliana glycine decarboxylase P-protein 1) S.X. H.G.
0.72 88.3 Ta.1139.1.S1_x_at BJ263196 - - 5e-14 At4g10340 LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.3 96.7 GSM246387 SB169_Stem_ rep2_at anthesis GSE9767 Genotypic differences in water soluble carbohydrate metabolism in stem
4.2 96.6 GSM298055 Leaf tissue of Harnesk at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.2 96.6 GSM246391 SB62_Stem_ rep2_at anthesis GSE9767 Genotypic differences in water soluble carbohydrate metabolism in stem
4.2 96.6 GSM298056 Leaf tissue of Harnesk at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.2 96.6 GSM246392 SB109_Stem_ rep1_at anthesis GSE9767 Genotypic differences in water soluble carbohydrate metabolism in stem
4.1 96.4 GSM246397 SB57_Stem_ rep2_at anthesis GSE9767 Genotypic differences in water soluble carbohydrate metabolism in stem
4.0 96.3 GSM246398 SB3_Stem_ rep1_at anthesis GSE9767 Genotypic differences in water soluble carbohydrate metabolism in stem
3.9 96.1 GSM246385 SB165_Stem_ rep2_at anthesis GSE9767 Genotypic differences in water soluble carbohydrate metabolism in stem
3.9 96.1 GSM246384 SB165_Stem_ rep1_at anthesis GSE9767 Genotypic differences in water soluble carbohydrate metabolism in stem
3.9 96.1 GSM298053 Leaf tissue of Harnesk at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 3e-70 266 TaAffx.6885.2.S1_at CA671267 - - 5e-25 Atcg00520 - C.G. S.X.
0.17 1e-41 171 TaAffx.6885.3.A1_s_at CA674571 - - 3e+0 Atcg00520 - C.G. S.X.
0.04 3e-8 59 TaAffx.3720.2.S1_at CA662374 - - 1e-68 Atcg00900 - C.G. S.X.
0.04 3e-8 59 Ta.22882.1.S1_at CA711156 - - 5e+0 At3g05230 signal peptidase subunit family protein C.G. S.X.
0.04 1e-7 57 Ta.23348.3.A1_a_at CA675884 - - 4e+0 At1g60985 SCRL6 (SCR-Like 6) C.G. S.X.
0.04 1e-7 57 Ta.23348.3.A1_x_at CA675884 - - 4e+0 At1g60985 SCRL6 (SCR-Like 6) C.G. S.X.
0.05 1e-7 57 Ta.22882.2.A1_at CA675485 - - 4e-2 At5g41340 UBC4 (UBIQUITIN CONJUGATING ENZYME 4) C.G. S.X.
0.05 5e-7 56 TaAffx.7056.1.S1_at CA669593 - - 3e+0 At5g17073 unknown protein C.G. S.X.
0.04 8e-6 52 TaAffx.77669.1.S1_at CA744460 - - 7e-1 At3g03220 ATEXPA13 (ARABIDOPSIS THALIANA EXPANSIN A13) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.54 2e-27 123 Arabidopsis thaliana Atcg00520 - - Encodes a protein required for photosystem I assembly and stability. In cyanobacteria, loss of function mutation in this gene increases PSII/PSI ratio without any influence on photoautotrophic growth. - - - C.G. S.X.
0.03 1e+1 32 Glycine max GmaAffx.37055.1.A1_at BM142939 - - 1e+0 At4g08270 - C.G. S.X.
0.41 6e-122 436 Hordeum vulgare HVSMEc0011A03f_at HVSMEc0011A03f - - 1e-23 Atcg00520 - C.G. S.X.
0.68 9e-112 404 Oryza sativa OsAffx.32257.1.S1_x_at - - - 0 C.G. S.X.
0.29 4e-42 173 Populus trichocarpa Ptp.7514.1.S1_at CK109314 hypothetical protein - 9e-152 Atcg00520 - C.G. S.X.
0.05 1e-29 129 Vitis vinifera 1620102_at CF514700 - - 0 Atcg00540 - C.G. S.X.
0.68 1e-119 428 Zea mays ZmAffx.1465.1.S1_at 11990232-32 - - 9e-60 Atcg00520 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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