CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID TaAffx.66625.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 86.3 TaAffx.66625.1.S1_at BG908611 - - 8e-2 At1g14060 - S.X. H.G.
0.80 92.2 TaAffx.112453.1.S1_s_at CA625557 - - 1e-1 At1g76820 GTP binding / GTPase S.X. H.G.
0.71 88.0 Ta.1672.1.S1_x_at BQ619780 - - 3e-6 At2g24790 COL3 (CONSTANS-LIKE 3) S.X. H.G.
0.55 76.8 Ta.22404.1.S1_at CK214953 - - 2e-7 At3g48590 NF-YC1 (NUCLEAR FACTOR Y, SUBUNIT C1) S.X. H.G.
0.55 76.8 TaAffx.112453.1.S1_at CA625557 - - 1e-1 At1g76820 GTP binding / GTPase S.X. H.G.
0.40 58.4 Ta.23765.1.S1_at CK213032 - - 2e-4 At4g15545 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.3 98.6 GSM143510 Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
7.0 98.5 GSM250909 TcLr1_7dpi_mock_rep2 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.6 98.3 GSM250901 Tc_7dpi_mock_rep1 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.6 98.3 GSM250903 TcLr1_7dpi_mock_rep1 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.3 98.2 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.2 98.1 GSM250905 TcLr34_7dpi_mock_rep1 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.9 98.0 GSM250915 TcLr1_7dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.9 98.0 GSM250890 Tc_3dpi_inoculated_rep2 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.9 98.0 GSM250883 Tc_3dpi_mock_rep1 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.9 98.0 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 3e-29 129 Ta.12460.2.S1_at CA656650 - - 9e-1 At3g26070 plastid-lipid associated protein PAP / fibrillin family protein C.G. S.X.
0.05 1e-3 44 Ta.6239.2.S1_x_at BJ300290 - - 1e+0 At5g23760 heavy-metal-associated domain-containing protein C.G. S.X.
0.04 5e-3 42 TaAffx.30658.1.S1_at CA623119 - - 3e-1 At1g21500 unknown protein C.G. S.X.
0.04 2e-2 40 TaAffx.78140.1.S1_at CA737007 - - 2e+0 At2g26020 PDF1.2b (plant defensin 1.2b) C.G. S.X.
0.03 2e-2 40 Ta.9697.1.S1_s_at BJ242494 - - 1e-3 At1g22990 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related C.G. S.X.
0.04 2e-2 40 Ta.959.2.S1_at CD904099 - - 1e+0 At5g16990 NADP-dependent oxidoreductase, putative C.G. S.X.
0.04 2e-2 40 Ta.24929.3.S1_x_at CA686219 - - 1e+0 At5g16990 NADP-dependent oxidoreductase, putative C.G. S.X.
0.03 8e-2 38 TaAffx.29257.1.S1_at CA646899 - - 4e+0 At2g44290 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3) C.G. S.X.
0.03 8e-2 38 TaAffx.107491.1.S1_at CA699093 - - 1e+0 At5g08410 FTRA2 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 8e-2 38 Arabidopsis thaliana At1g14060 837966 - F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;MOPFBV - - - C.G. S.X.
0.04 3e-2 40 Glycine max GmaAffx.73506.2.S1_at BE611971 - - 9e-1 At5g24316 proline-rich family protein C.G. S.X.
0.53 5e-174 609 Hordeum vulgare Contig7995_at Contig7995 - - 2e-3 At4g28180 unknown protein C.G. S.X.
0.38 5e-26 119 Oryza sativa Os03g0704100 AK070474.1 - PAP fibrillin family protein 2e+0 At1g35410 - C.G. S.X.
0.03 3e-2 40 Populus trichocarpa PtpAffx.136498.1.S1_at CF230021 hypothetical protein - 6e-3 At1g52260 ATPDIL1-5 (PDI-LIKE 1-5) C.G. S.X.
0.04 1e+0 32 Vitis vinifera 1622541_at CB342787 hypothetical protein LOC100258249 - 4e-35 At5g12190 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.03 3e-2 38 Zea mays Zm.14043.3.S1_a_at AW258101 enolase1 - 4e-22 At2g36530 LOS2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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