Gene omics information

Query gene ID	TaAffx.6598.2.S1_s_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	79.2	TaAffx.6598.2.S1_s_at	CA720245	-	-	7e-9	At3g07100	protein transport protein Sec24, putative	S.X.	H.G.	Please select
0.70	87.2	Ta.14195.3.S1_a_at	CA640695	-	-	4e+0	At4g34450	coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative	S.X.	H.G.	Please select
0.64	83.6	Ta.14195.3.S1_x_at	CA640695	-	-	4e+0	At4g34450	coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative	S.X.	H.G.	Please select
0.63	83.1	Ta.23734.3.S1_x_at	CA605815	-	-	1e+0	At5g23405	high mobility group (HMG1/2) family protein	S.X.	H.G.	Please select
0.63	83.1	Ta.23734.3.S1_a_at	CA605815	-	-	1e+0	At5g23405	high mobility group (HMG1/2) family protein	S.X.	H.G.	Please select
0.60	81.0	TaAffx.81795.1.S1_at	CA644276	-	-	2e-4	At5g57320	villin, putative	S.X.	H.G.	Please select
0.59	79.8	Ta.1931.2.S1_a_at	CA610152	-	-	1e+0	At3g29720	transferase-related	S.X.	H.G.	Please select
0.52	73.7	TaAffx.56992.1.S1_at	CA638685	-	-	3e-4	At1g30450	CCC1 (CATION-CHLORIDE CO-TRANSPORTER 1)	S.X.	H.G.	Please select
0.42	60.9	Ta.3584.2.S1_a_at	CA601548	-	-	1e+0	At5g25102	unknown protein	S.X.	H.G.	Please select
0.42	60.9	Ta.6867.2.S1_a_at	BJ263192	-	-	3e-4	At3g61050	NTMC2T4	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.2	98.8	GSM111185	genotype C22 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
7.1	98.5	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
5.7	97.9	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
5.2	97.5	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
4.7	97.1	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
4.3	96.7	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
4.0	96.3	GSM111237	genotype F38b developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.9	96.1	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
3.6	95.6	GSM111229	genotype B65 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.5	95.4	GSM138152	genotype G32 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	0	718	TaAffx.6598.1.S1_at	CD938071	-	-	1e-19	At3g07100	protein transport protein Sec24, putative	C.G.	S.X.	Please select
0.18	2e-62	240	TaAffx.6598.3.S1_at	CA681997	-	-	7e-2	At1g09840	ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41)	C.G.	S.X.	Please select
0.03	5e-4	46	Ta.5493.1.S1_at	CD454357	-	-	1e+0	At4g34460	AGB1 (GTP BINDING PROTEIN BETA 1)	C.G.	S.X.	Please select
0.03	5e-4	46	Ta.5493.1.S1_s_at	CD454357	-	-	1e+0	At4g34460	AGB1 (GTP BINDING PROTEIN BETA 1)	C.G.	S.X.	Please select
0.01	4e-1	36	Ta.4132.1.S1_at	BJ217065	-	-	9e-13	At5g65000	nucleotide-sugar transporter family protein	C.G.	S.X.	Please select
0.04	2e+0	34	TaAffx.91895.1.A1_at	BJ288570	-	-	4e+0	At5g50870	UBC27 (ubiquitin-conjugating enzyme 27)	C.G.	S.X.	Please select
0.03	2e+0	34	TaAffx.28064.1.S1_at	CA665734	-	-	2e-4	At1g53590	NTMC2T6.1	C.G.	S.X.	Please select
0.03	2e+0	34	Ta.26062.1.S1_at	CD934490	-	-	1e+0	At5g15640	mitochondrial substrate carrier family protein	C.G.	S.X.	Please select
0.03	7e+0	32	TaAffx.77975.1.S1_at	CA739152	-	-	8e+0	At5g56050	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	7e-9	61	Arabidopsis thaliana	At3g07100	819896	protein transport protein Sec24, putative	F:protein binding, transporter activity, zinc ion binding;P:intracellular protein transport, transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;MFBOPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.21175.1.S1_at	AW099983	-	-	3e-16	At2g17990	-	C.G.	S.X.	Please select
0.24	0	648	Hordeum vulgare	Contig4175_at	Contig4175	-	-	1e-19	At3g07100	protein transport protein Sec24, putative	C.G.	S.X.	Please select
0.16	3e-136	486	Oryza sativa	Os04g0129500	AK071986.1	-	Sec23/Sec24 zinc finger domain containing protein	7e-31	At3g07100	protein transport protein Sec24, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e-1	36	Populus trichocarpa	PtpAffx.204779.1.S1_at	pmrna9413	hypothetical protein	-	4e-3	At5g64000	SAL2	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	8e+0	30	Vitis vinifera	1622847_a_at	CF403381	hypothetical protein LOC100251447	-	5e-9	At4g18380	F-box family protein	C.G.	S.X.	Please select
0.20	1e-94	345	Zea mays	Zm.6026.1.S1_at	CA405322	hypothetical protein LOC100194158	-	7e-21	At3g07100	protein transport protein Sec24, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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