Gene omics information

Query gene ID	TaAffx.59343.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.1	TaAffx.59343.1.S1_at	CA602787	-	-	4e+0	At2g23840	HNH endonuclease domain-containing protein	S.X.	H.G.	Please select
0.67	86.3	Ta.14771.2.S1_x_at	CA639689	-	-	4e-1	At1g68090	ANN5	S.X.	H.G.	Please select
0.61	82.0	Ta.521.1.S1_s_at	CD861631	-	-	5e+0	At3g19860	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please select
0.56	78.6	Ta.28493.1.S1_at	CA675210	-	-	2e-1	At3g17160	unknown protein	S.X.	H.G.	Please select
0.50	72.4	Ta.521.1.S1_at	CD861631	-	-	5e+0	At3g19860	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please select
0.50	72.4	Ta.21309.1.S1_at	CA646455	-	-	2e-17	At5g08380	AtAGAL1 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 1)	S.X.	H.G.	Please select
0.48	69.0	Ta.14771.1.S1_at	CA681870	-	-	2e+0	At5g48160	OBE2 (OBERON2)	S.X.	H.G.	Please select
0.47	67.9	Ta.8859.1.S1_at	BQ162524	-	-	2e-1	At4g39950	CYP79B2	S.X.	H.G.	Please select
0.47	67.9	TaAffx.109116.1.S1_at	CA680014	-	-	3e-1	At4g10490	oxidoreductase, 2OG-Fe(II) oxygenase family protein	S.X.	H.G.	Please select
0.46	66.8	Ta.28493.1.S1_x_at	CA675210	-	-	2e-1	At3g17160	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.3	99.2	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
10.3	99.2	GSM143515	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
9.6	99.1	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
9.2	99.0	GSM143520	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
9.2	99.0	GSM250902	Tc_7dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.1	99.0	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.6	98.9	GSM250890	Tc_3dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.5	98.9	GSM143518	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
8.5	98.9	GSM143519	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
8.2	98.8	GSM250884	Tc_3dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.36	4e-68	258	TaAffx.42772.1.A1_at	CD453852	-	-	5e+0	At3g57490	40S ribosomal protein S2 (RPS2D)	C.G.	S.X.	Please select
0.02	2e-1	36	Ta.28714.1.S1_at	CK216318	Thiol-specific antioxidant protein	-	3e-77	At3g11630	2-cys peroxiredoxin, chloroplast (BAS1)	C.G.	S.X.	Please select
0.02	2e-1	36	Ta.28714.1.A1_s_at	CK211498	Thiol-specific antioxidant protein	-	3e-77	At3g11630	2-cys peroxiredoxin, chloroplast (BAS1)	C.G.	S.X.	Please select
0.03	1e+0	34	TaAffx.113858.1.S1_x_at	BQ905249	-	-	7e-6	At5g05710	pleckstrin homology (PH) domain-containing protein	C.G.	S.X.	Please select
0.03	1e+0	34	Ta.24549.1.S1_at	BQ160743	-	-	4e+0	At4g32800	AP2 domain-containing transcription factor TINY, putative	C.G.	S.X.	Please select
0.03	1e+0	34	Ta.24549.2.S1_at	CA654908	-	-	8e-14	At5g05710	pleckstrin homology (PH) domain-containing protein	C.G.	S.X.	Please select
0.03	1e+0	34	Ta.24549.2.S1_x_at	CA654908	-	-	8e-14	At5g05710	pleckstrin homology (PH) domain-containing protein	C.G.	S.X.	Please select
0.02	1e+0	34	Ta.21842.1.S1_at	CA704521	-	-	9e-3	At5g21020	-	C.G.	S.X.	Please select
0.02	1e+0	34	Ta.1167.1.S1_at	CA742206	-	-	4e-55	At5g66190	FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e+0	32	Arabidopsis thaliana	At2g23840	816916	HNH endonuclease domain-containing protein	F:endonuclease activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OBVPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e+0	34	Glycine max	HgAffx.5321.1.S1_at	CD748103	-	-	2e-5	At5g58420	40S ribosomal protein S4 (RPS4D)	C.G.	S.X.	Please select
0.54	3e-125	446	Hordeum vulgare	Contig23161_at	Contig23161	-	-	6e+0	At1g51915	cryptdin protein-related	C.G.	S.X.	Please select
0.18	8e-43	174	Oryza sativa	Os10g0101200	AK072954.1	-	Peptidase S10, serine carboxypeptidase familyprotein	3e+0	At5g58900	myb family transcription factor	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	PtpAffx.207039.1.S1_at	pmrna13949	hypothetical protein	-	2e-4	At3g58850	PAR2 (PHY RAPIDLY REGULATED 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	4e+0	30	Vitis vinifera	1614772_at	CD718074	-	-	5e+0	At5g06790	unknown protein	C.G.	S.X.	Please select
0.03	6e+0	30	Zea mays	Zm.6741.1.A1_at	AI396113	hypothetical protein LOC100275507	-	6e+0	At5g60330	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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