CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID TaAffx.58533.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.2 TaAffx.58533.1.S1_at CA618813 - - 1e+0 At5g47700 60S acidic ribosomal protein P1 (RPP1C) S.X. H.G.
0.83 93.4 TaAffx.31791.1.S1_at CA607567 - - 7e-1 At5g26717 - S.X. H.G.
0.80 92.2 Ta.1965.1.S1_at CA634037 - - 6e-3 At4g23330 eukaryotic translation initiation factor-related S.X. H.G.
0.80 92.2 TaAffx.8469.1.S1_at CA624919 - - 1e+1 At4g13140 - S.X. H.G.
0.57 79.2 TaAffx.84292.1.S1_at CA640524 - - 2e+0 At4g05070 unknown protein S.X. H.G.
0.56 78.6 TaAffx.30673.1.S1_at CA623010 - - 7e-11 At4g25630 FIB2 (FIBRILLARIN 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.2 99.0 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.6 98.9 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.9 98.7 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
6.2 98.1 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.8 97.9 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.7 97.9 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
5.5 97.8 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.1 97.5 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
3.8 96.0 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6 95.6 GSM138205 genotype H8 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-1 36 TaAffx.9184.1.A1_at BJ298183 - - 1e+0 At3g52460 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.03 3e-1 36 TaAffx.31915.1.S1_at CA605338 - - 1e+0 At4g27654 unknown protein C.G. S.X.
0.03 3e-1 36 TaAffx.25891.1.S1_at CA694608 - - 4e+0 At5g47700 60S acidic ribosomal protein P1 (RPP1C) C.G. S.X.
0.03 3e-1 36 TaAffx.133256.1.S1_at CA704588 - - 1e-1 At5g45760 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.03 3e-1 36 TaAffx.131691.1.S1_at BJ320808 - - 5e+0 At2g21150 XCT (XAP5 CIRCADIAN TIMEKEEPER) C.G. S.X.
0.04 3e-1 36 TaAffx.114334.1.S1_at CA594753 - - 8e+0 At5g17523 - C.G. S.X.
0.03 3e-1 36 TaAffx.107556.1.S1_at CA698050 - - 4e+0 At5g54760 eukaryotic translation initiation factor SUI1, putative C.G. S.X.
0.02 3e-1 36 Ta.4127.1.S1_a_at BJ242227 - - 2e-1 At5g40630 ubiquitin family protein C.G. S.X.
0.04 3e-1 36 Ta.4127.3.S1_a_at CA729644 - - 4e+0 At3g29780 RALFL27 (ralf-like 27) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 34 Arabidopsis thaliana At5g47700 834821 60S acidic ribosomal protein P1 (RPP1C) F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane;MFPOAB - - - C.G. S.X.
0.05 2e-2 40 Glycine max GmaAffx.58230.1.S1_s_at BE583535 - - 3e+0 At4g11870 unknown protein C.G. S.X.
0.07 3e-2 38 Hordeum vulgare Contig3281_s_at Contig3281 - - 2e-45 At5g57655 xylose isomerase family protein C.G. S.X.
0.07 8e-3 42 Oryza sativa Os07g0669100 AK072249.1 - Xylose isomerase (EC 5.3.1.5) 3e-62 At5g57655 xylose isomerase family protein C.G. S.X.
0.05 2e-2 40 Populus trichocarpa PtpAffx.209545.1.S1_at pmrna18911 hypothetical protein - 4e-8 At2g27720 60S acidic ribosomal protein P2 (RPP2A) C.G. S.X.
0.04 3e-1 34 Vitis vinifera 1620881_at CF568956 - - 3e-4 At5g54900 ATRBP45A (RNA-binding protein 45A) C.G. S.X.
0.30 4e-168 589 Zea mays Zm.8993.1.A1_a_at AI649732 hypothetical protein LOC100194128 /// hypothetical protein LOC100194385 - 2e-27 At5g57655 xylose isomerase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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