CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID TaAffx.58227.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 90.8 TaAffx.58227.1.S1_at CA621342 - - 1e+0 At5g52160 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
0.74 89.4 TaAffx.58638.1.S1_at CA617698 - - 4e+0 At1g12805 nucleotide binding S.X. H.G.
0.73 89.1 TaAffx.4913.1.S1_at CA728728 - - 2e+1 At5g67060 HEC1 (HECATE 1) S.X. H.G.
0.69 86.9 TaAffx.50210.1.S1_at CA744417 - - 7e-2 At1g60880 AGL56 S.X. H.G.
0.68 86.5 TaAffx.29732.1.S1_at CA636473 - - 7e-1 At4g14550 IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14) S.X. H.G.
0.67 86.3 TaAffx.105769.1.S1_at CA730148 - - 3e-1 At4g17500 ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1) S.X. H.G.
0.63 83.1 TaAffx.112158.1.S1_at CA626538 - - 2e+1 At3g28590 unknown protein S.X. H.G.
0.62 82.3 TaAffx.35493.1.S1_at BQ606743 - - 4e+0 At5g07460 PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2) S.X. H.G.
0.54 75.5 TaAffx.25008.1.S1_at CA708299 - - 1e+1 At5g24370 invertase/pectin methylesterase inhibitor family protein S.X. H.G.
0.54 75.5 TaAffx.79437.1.S1_at CA715704 - - 3e+0 At1g02680 TAF13 (TBP-ASSOCIATED FACTOR 13) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.0 99.5 GSM298067 Leaf tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
10.9 99.3 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.6 98.9 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.4 98.2 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
6.3 98.2 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.1 98.1 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.8 97.9 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
5.6 97.8 GSM298078 Leaf tissue of Solstice at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.6 97.0 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.5 96.9 GSM298090 Leaf tissue of Solstice at 5 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e+0 32 TaAffx.110629.2.S1_x_at CA678087 - - 9e-1 At2g29450 ATGSTU5 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 5) C.G. S.X.
0.04 4e+0 32 TaAffx.106315.1.S1_at CA720427 - - 1e+1 At5g09680 cytochrome b5 domain-containing protein C.G. S.X.
0.02 4e+0 32 Ta.7524.1.A1_at BJ250276 - - 6e-7 At1g01060 LHY (LATE ELONGATED HYPOCOTYL) C.G. S.X.
0.02 4e+0 32 Ta.7242.1.S1_at CD895027 - - 2e+0 At1g77122 unknown protein C.G. S.X.
0.02 4e+0 32 Ta.25044.1.S1_at BQ161240 - - 6e-3 At3g18760 ribosomal protein S6 family protein C.G. S.X.
0.03 2e+1 30 TaAffx.85183.1.S1_at CA624937 - - 3e+0 At3g03830 auxin-responsive protein, putative C.G. S.X.
0.01 2e+1 30 TaAffx.56231.1.S1_at CD936424 - - 1e+0 At3g61620 RRP41 C.G. S.X.
0.03 2e+1 30 TaAffx.54592.1.S1_at CA679609 - - 1e+0 At5g01910 unknown protein C.G. S.X.
0.03 2e+1 30 TaAffx.54083.1.S1_at CA686008 - - 4e+0 At5g21125 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 34 Arabidopsis thaliana At5g52160 835292 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P - - - C.G. S.X.
0.04 4e-1 36 Glycine max GmaAffx.82485.1.S1_at BM085837 - - 1e-21 At4g14580 CIPK4 (CBL-interacting protein kinase 4) C.G. S.X.
0.03 2e+0 32 Hordeum vulgare HVSMEa0006N15r2_s_at HVSMEa0006N15r2 - - 4e+0 At2g40765 unknown protein C.G. S.X.
0.04 8e+0 32 Oryza sativa Os05g0426700 9633.m03274 - - 6e-1 At2g46990 IAA20 (INDOLE-3-ACETIC ACID INDUCIBLE 20) C.G. S.X.
0.03 2e+1 30 Populus trichocarpa PtpAffx.3470.1.S1_at BU835565 - - 1e-2 At5g48205 zinc ion binding C.G. S.X.
0.04 5e+0 30 Vitis vinifera 1607102_at CF606606 - - 2e+0 At3g24506 unknown protein C.G. S.X.
0.03 7e+0 30 Zea mays Zm.12118.1.A1_at BQ034341 hypothetical protein LOC100277272 - 3e-1 At2g46330 AGP16 (ARABINOGALACTAN PROTEIN 16) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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