Gene omics information

Query gene ID	TaAffx.58197.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.82	92.7	TaAffx.58197.1.S1_at	CA621529	-	-	4e+0	At3g46320	histone H4	S.X.	H.G.	Please select
0.70	87.2	TaAffx.39457.1.A1_at	BG904975	-	-	2e+0	Atmg00850	-	S.X.	H.G.	Please select
0.65	83.9	Ta.12420.3.S1_x_at	CA619975	-	-	1e-2	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	S.X.	H.G.	Please select
0.56	78.6	TaAffx.81276.1.S1_at	CA687901	-	-	2e-1	At2g20260	PSAE-2 (photosystem I subunit E-2)	S.X.	H.G.	Please select
0.55	76.8	Ta.1977.2.A1_at	BE231484	-	-	1e+0	At3g07430	emb1990 (embryo defective 1990)	S.X.	H.G.	Please select
0.52	73.7	Ta.26642.1.A1_at	CD491457	-	-	5e-41	At1g32060	PRK (PHOSPHORIBULOKINASE)	S.X.	H.G.	Please select
0.47	67.9	TaAffx.108107.3.S1_at	CA714538	-	-	4e+0	At1g51950	IAA18 (INDOLE-3-ACETIC ACID INDUCIBLE 18)	S.X.	H.G.	Please select
0.46	66.8	TaAffx.56013.1.S1_at	CA658531	-	-	6e-1	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	S.X.	H.G.	Please select
0.41	59.6	TaAffx.121232.1.A1_at	BG907135	-	-	3e-2	At1g29500	auxin-responsive protein, putative	S.X.	H.G.	Please select
0.41	59.6	Ta.3916.3.S1_x_at	CA637132	-	-	4e+0	At5g20650	COPT5	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
27.8	99.8	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
21.2	99.7	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
16.8	99.6	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
15.1	99.6	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
13.7	99.5	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
13.6	99.5	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
12.9	99.4	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
12.7	99.4	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.9	99.3	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.9	98.7	GSM246398	SB3_Stem_ rep1_at anthesis	GSE9767	Genotypic differences in water soluble carbohydrate metabolism in stem

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.37	3e-47	188	Ta.10329.23.S1_at	CK217595	-	-	2e-21	At5g59690	histone H4	C.G.	S.X.	Please select
0.44	2e-45	182	Ta.10329.43.S1_at	BJ277068	-	-	9e-20	At5g59970	histone H4	C.G.	S.X.	Please select
0.44	2e-45	182	Ta.10329.43.S1_x_at	BJ277068	-	-	9e-20	At5g59970	histone H4	C.G.	S.X.	Please select
0.40	7e-45	180	Ta.10329.41.S1_x_at	BJ320207	-	-	4e-25	At5g59690	histone H4	C.G.	S.X.	Please select
0.41	2e-42	173	Ta.10329.19.S1_x_at	BJ216862	-	-	7e-24	At5g59690	histone H4	C.G.	S.X.	Please select
0.39	2e-42	173	Ta.10329.1.S1_x_at	BJ240295	-	-	7e-24	At5g59690	histone H4	C.G.	S.X.	Please select
0.42	2e-42	173	Ta.10329.9.S1_a_at	CA728584	-	-	9e-20	At5g59690	histone H4	C.G.	S.X.	Please select
0.35	4e-37	155	Ta.10329.29.S1_x_at	BJ300857	-	-	1e-19	At5g59690	histone H4	C.G.	S.X.	Please select
0.35	4e-37	155	Ta.10329.6.S1_at	CA742067	-	-	2e-18	At5g59690	histone H4	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	4e+0	32	Arabidopsis thaliana	At3g46320	823777	histone H4	F:DNA binding;P:chromosome organization, nucleosome assembly;C:nucleus, nucleosome;MOPFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.29	2e-24	113	Glycine max	PsAffx.CL536Contig1_at	PsAffx.CL536Contig1	-	-	7e-14	At5g59970	histone H4	C.G.	S.X.	Please select
0.45	3e-39	161	Hordeum vulgare	Contig9_x_at	Contig9	-	-	3e-22	At5g59690	histone H4	C.G.	S.X.	Please select
0.42	5e-35	149	Oryza sativa	Os09g0433600	AK058686.1	-	Histone H4	2e-20	At1g07660	histone H4	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.20	4e-4	46	Populus trichocarpa	PtpAffx.104205.1.A1_at	CV277856	-	-	1e-25	At5g59690	histone H4	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.19	5e-9	59	Vitis vinifera	1618097_at	BQ792545	hypothetical protein LOC100265646	-	2e-33	At5g59690	histone H4	C.G.	S.X.	Please select
0.45	1e-90	331	Zea mays	Zm.6721.1.A1_x_at	AI622516	Histone H4	-	1e-16	At5g59690	histone H4	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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