Gene omics information

Query gene ID	TaAffx.57986.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.81	92.4	TaAffx.57986.1.S1_at	CA623338	-	-	5e-1	At4g19270	unknown protein	S.X.	H.G.	Please select
0.35	49.8	Ta.1553.1.S1_at	CD452414	-	-	1e+0	At3g11180	oxidoreductase, 2OG-Fe(II) oxygenase family protein	S.X.	H.G.	Please select
0.33	46.9	TaAffx.38625.1.S1_at	BJ224452	-	-	6e-2	At2g01590	CRR3 (CHLORORESPIRATORY REDUCTION 3)	S.X.	H.G.	Please select
0.32	44.4	TaAffx.128748.3.S1_at	CA654733	-	-	1e+0	At4g33980	unknown protein	S.X.	H.G.	Please select
0.30	40.9	TaAffx.30598.1.S1_at	CA623743	-	-	1e+0	At3g05230	signal peptidase subunit family protein	S.X.	H.G.	Please select
0.29	39.2	TaAffx.112158.1.S1_at	CA626538	-	-	2e+1	At3g28590	unknown protein	S.X.	H.G.	Please select
0.28	39.2	TaAffx.16699.2.S1_x_at	CA682179	-	-	4e+0	At5g36130	cytochrome P450 family	S.X.	H.G.	Please select
0.28	39.2	Ta.3203.2.S1_x_at	CA621738	-	-	5e-6	At1g27530	-	S.X.	H.G.	Please select
0.28	39.2	TaAffx.3664.1.S1_at	CD876496	-	-	2e+0	At2g47710	universal stress protein (USP) family protein	S.X.	H.G.	Please select
0.28	39.2	TaAffx.105769.1.S1_at	CA730148	-	-	3e-1	At4g17500	ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
32.9	99.9	GSM314284	tissue type: 22 DAP embryo - rep1	GSE12508	Transcription patterns during wheat development
8.7	98.9	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
8.6	98.9	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.8	98.7	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.8	98.4	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
6.8	98.4	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
6.1	98.1	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.8	97.9	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.2	97.5	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.2	97.5	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	1e-5	50	Ta.10701.2.S1_at	BG907423	-	-	8e-1	At1g51355	unknown protein	C.G.	S.X.	Please select
0.06	6e-4	44	TaAffx.64954.1.S1_at	BJ268603	-	-	2e-2	At1g66890	-	C.G.	S.X.	Please select
0.06	6e-4	44	Ta.3276.3.S1_x_at	CA712530	-	-	3e-16	At5g12190	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.06	6e-4	44	Ta.3276.3.S1_at	CA712530	-	-	3e-16	At5g12190	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.09	2e-3	42	TaAffx.24322.1.S1_at	CA721021	-	-	7e+0	At5g63130	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein	C.G.	S.X.	Please select
0.06	4e-2	38	TaAffx.5266.1.S1_at	CA716941	-	-	2e-1	At1g21065	unknown protein	C.G.	S.X.	Please select
0.05	4e-2	38	TaAffx.24991.1.S1_at	CA708606	-	-	8e-1	At5g39130	germin-like protein, putative	C.G.	S.X.	Please select
0.05	4e-2	38	TaAffx.24991.1.S1_x_at	CA708606	-	-	8e-1	At5g39130	germin-like protein, putative	C.G.	S.X.	Please select
0.03	4e-2	38	TaAffx.128560.1.S1_at	CA699137	Cold shock domain protein 3	-	6e-7	At4g38680	GRP2 (GLYCINE RICH PROTEIN 2)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	5e-1	34	Arabidopsis thaliana	At4g19270	827667	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e-1	36	Glycine max	PsAffx.C10000031_s_at	PsAffx.C10000031	-	-	2e-1	At3g16510	C2 domain-containing protein	C.G.	S.X.	Please select
0.04	4e-3	40	Hordeum vulgare	Contig8928_at	Contig8928	-	-	7e-18	At5g12190	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.06	3e-10	65	Oryza sativa	Os09g0466900	AK122120.1	-	Protein kinase domain containing protein	7e-2	At1g12680	PEPKR2 (Phosphoenolpyruvate carboxylase-related kinase 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e-2	38	Populus trichocarpa	PtpAffx.220611.1.S1_at	pmrna37016	hypothetical protein	-	2e+1	At5g08180	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e-2	36	Vitis vinifera	1618486_at	CF568886	-	-	6e-30	At2g29550	TUB7	C.G.	S.X.	Please select
0.06	6e-2	36	Zea mays	Zm.9368.1.A1_at	BM268763	-	-	1e+0	At5g06650	GIS2 (GLABROUS INFLORESCENCE STEMS 2)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage