Gene omics information

Query gene ID	TaAffx.5779.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	89.8	TaAffx.5779.1.S1_at	BJ307256	-	-	1e-1	At1g35365	unknown protein	S.X.	H.G.	Please select
0.55	76.8	Ta.13084.1.S1_at	CA744806	-	-	3e-1	At3g13437	unknown protein	S.X.	H.G.	Please select
0.44	64.5	Ta.11963.1.A1_at	BQ171171	-	-	4e+0	At5g60200	Dof-type zinc finger domain-containing protein	S.X.	H.G.	Please select
0.44	64.5	Ta.19632.1.S1_at	BT009194.1	-	-	2e-1	At5g63060	transporter	S.X.	H.G.	Please select
0.40	58.4	Ta.26339.2.S1_at	CD490757	-	-	2e+0	At5g36001	-	S.X.	H.G.	Please select
0.30	40.9	Ta.10362.2.A1_a_at	BJ300127	-	-	4e+0	At4g35295	homoserine kinase, putative / HSK, putative	S.X.	H.G.	Please select
0.24	30.3	TaAffx.21100.1.S1_at	CD885592	-	-	1e-1	At4g02790	GTP-binding family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.6	99.1	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.7	98.9	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.6	98.9	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.3	98.6	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.4	98.2	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.3	98.2	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.2	98.1	GSM324493	Si+ B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
6.0	98.0	GSM324495	Si+ B+ rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.8	97.9	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.8	97.9	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.42	7e-130	464	TaAffx.5779.3.S1_x_at	CA621188	-	-	3e-1	At1g35365	unknown protein	C.G.	S.X.	Please select
0.42	7e-130	464	TaAffx.5779.3.S1_at	CA621188	-	-	3e-1	At1g35365	unknown protein	C.G.	S.X.	Please select
0.26	6e-75	282	TaAffx.5779.5.S1_x_at	CA729656	-	-	9e-1	At2g45960	PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B)	C.G.	S.X.	Please select
0.26	6e-75	282	TaAffx.5779.5.S1_s_at	CA729656	-	-	9e-1	At2g45960	PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B)	C.G.	S.X.	Please select
0.19	1e-38	161	TaAffx.5779.2.S1_at	BJ209314	-	-	3e-1	At2g01340	unknown protein	C.G.	S.X.	Please select
0.09	2e-34	147	TaAffx.5779.4.S1_at	CA687409	-	-	4e+0	At1g71310	unknown protein	C.G.	S.X.	Please select
0.12	2e-10	67	TaAffx.7877.1.S1_at	CA645821	-	-	4e+0	At5g45550	mob1/phocein family protein	C.G.	S.X.	Please select
0.16	2e-6	54	Ta.10324.1.A1_at	BJ250397	-	-	2e+0	At2g37060	NF-YB8 (NUCLEAR FACTOR Y, SUBUNIT B8)	C.G.	S.X.	Please select
0.02	6e-4	46	Ta.29371.1.S1_at	CA710939	-	-	2e+0	At1g01800	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-1	38	Arabidopsis thaliana	At1g35365	840426	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	8e-1	36	Glycine max	GmaAffx.7773.1.S1_at	BE191329	-	-	2e-4	At4g38060	unknown protein	C.G.	S.X.	Please select
0.07	1e-9	63	Hordeum vulgare	Contig8378_at	Contig8378	-	-	2e+0	At2g28370	-	C.G.	S.X.	Please select
0.02	4e+0	34	Oryza sativa	Os01g0886200	AY551913.1	-	AGAMOUS homolog	8e-3	At2g42830	SHP2 (SHATTERPROOF 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e+1	32	Populus trichocarpa	PtpAffx.50058.1.A1_a_at	CV260838	hypothetical protein	-	2e-1	At2g28660	copper-binding family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	1e+1	30	Vitis vinifera	1615934_at	CF214274	-	-	2e-1	At5g11740	AGP15 (ARABINOGALACTAN PROTEIN 15)	C.G.	S.X.	Please select
0.02	6e-2	38	Zea mays	Zm.6355.1.A1_at	AI738250	hypothetical protein LOC100274160	-	7e+0	At3g49550	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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