Gene omics information

Query gene ID	TaAffx.57082.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.1	TaAffx.57082.1.S1_at	CA637040	-	-	4e+0	At5g55508	unknown protein	S.X.	H.G.	Please select
0.17	19.8	TaAffx.66590.1.A1_at	BG909262	-	-	1e+1	At4g21440	ATMYB102 (ARABIDOPSIS MYB-LIKE 102)	S.X.	H.G.	Please select
0.11	12.4	Ta.7861.1.S1_at	CD922623	-	-	2e+0	At3g63010	GID1B (GA INSENSITIVE DWARF1B)	S.X.	H.G.	Please select
0.11	12.4	TaAffx.12517.1.S1_at	BJ257824	-	-	1e+0	At5g34581	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.11	12.4	TaAffx.30782.1.S1_at	CA622085	-	-	2e+1	At5g55200	co-chaperone grpE protein, putative	S.X.	H.G.	Please select
0.11	12.4	Ta.1238.3.S1_a_at	CA728496	-	-	3e-1	At1g25472	CPuORF54 (Conserved peptide upstream open reading frame 54)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.4	99.8	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
14.4	99.5	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
12.1	99.4	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.1	99.2	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.8	98.4	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.7	97.1	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.5	96.9	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM143523	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.0	96.3	GSM138203	genotype F44 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.8	96.0	GSM138154	genotype H5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	TaAffx.72830.1.S1_at	CA717766	-	-	1e+0	At5g55570	unknown protein	C.G.	S.X.	Please select
0.04	3e-1	36	TaAffx.26299.1.S1_at	CA690227	-	-	4e+0	At1g78370	ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20)	C.G.	S.X.	Please select
0.02	1e+0	34	TaAffx.77892.1.S1_at	CA717320	-	-	1e-1	At3g04590	DNA-binding family protein	C.G.	S.X.	Please select
0.03	1e+0	34	TaAffx.51319.1.S1_at	CA727539	-	-	4e+0	At3g59840	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	TaAffx.44208.1.S1_at	CK215996	-	-	2e+0	At2g47485	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	34	TaAffx.106618.1.S1_at	CA714975	-	-	3e+0	At3g53970	proteasome inhibitor-related	C.G.	S.X.	Please select
0.02	1e+0	34	Ta.4300.1.S1_at	CA686472	-	-	6e-4	At2g02370	-	C.G.	S.X.	Please select
0.03	1e+0	34	Ta.26029.1.A1_at	CD454796	-	-	5e+0	At5g38920	nucleic acid binding / ribonuclease H	C.G.	S.X.	Please select
0.03	4e+0	32	TaAffx.92409.1.S1_at	BJ267653	-	-	1e+0	At3g21350	RNA polymerase transcriptional regulation mediator-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	4e+0	32	Arabidopsis thaliana	At5g55508	6241412	unknown protein	F:unknown;P:unknown;C:unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e+0	34	Glycine max	HgAffx.14691.1.S1_at	CD748122	-	-	3e-1	At2g35990	-	C.G.	S.X.	Please select
0.03	5e-1	34	Hordeum vulgare	Contig14667_at	Contig14667	-	-	6e+0	At4g33560	unknown protein	C.G.	S.X.	Please select
0.04	5e-1	36	Oryza sativa	OsAffx.26648.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+0	34	Populus trichocarpa	PtpAffx.218715.1.S1_at	pmrna34437	hypothetical protein	-	4e-28	Atmg00080	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e+0	30	Vitis vinifera	1620693_at	CF513433	-	-	1e-12	At2g22730	transporter-related	C.G.	S.X.	Please select
0.03	7e+0	30	Zea mays	ZmAffx.775.1.A1_at	AI746211	S-ribonuclease binding protein SBP1	-	8e-1	At4g32480	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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