Gene omics information

Query gene ID	TaAffx.56613.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	TaAffx.56613.1.S1_at	CA647782	-	-	1e+0	At3g06110	MKP2 (MAPK PHOSPHATASE 2)	S.X.	H.G.	Please select
0.50	72.4	TaAffx.65688.1.S1_x_at	BJ232502	-	-	2e+1	At3g02480	ABA-responsive protein-related	S.X.	H.G.	Please select
0.31	42.7	TaAffx.65688.1.S1_at	BJ232502	-	-	2e+1	At3g02480	ABA-responsive protein-related	S.X.	H.G.	Please select
0.20	24.0	TaAffx.78428.1.S1_at	CA732797	-	-	1e+0	At4g15610	integral membrane family protein	S.X.	H.G.	Please select
0.18	21.0	TaAffx.111311.1.S1_at	CA643595	-	-	1e+0	At1g61940	AtTLP4 (TUBBY LIKE PROTEIN 4)	S.X.	H.G.	Please select
0.09	10.4	TaAffx.87138.1.S1_at	CA595147	-	-	4e+0	At5g01880	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
32.1	99.9	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
19.7	99.7	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
12.9	99.4	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.3	99.0	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.8	98.7	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.5	98.6	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.9	98.4	GSM111185	genotype C22 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
6.6	98.3	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.6	98.3	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
5.0	97.4	GSM111247	genotype H10 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	3e-1	36	TaAffx.53344.1.S1_at	CA693402	-	-	6e-1	At1g70480	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	36	Ta.20469.1.S1_at	CA642463	-	-	1e-14	At5g49900	catalytic/ glucosylceramidase	C.G.	S.X.	Please select
0.02	1e+0	34	Ta.9145.2.S1_a_at	BQ169521	-	-	5e-1	At4g09040	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.02	1e+0	34	Ta.9145.2.S1_x_at	BQ169521	-	-	5e-1	At4g09040	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.03	1e+0	34	Ta.19425.1.S1_at	CA651491	-	-	3e+0	At4g08455	BTB/POZ domain-containing protein	C.G.	S.X.	Please select
0.02	1e+0	34	Ta.11588.1.S1_x_at	BQ170405	-	-	2e+0	At1g21050	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Ta.11588.1.S1_at	BQ170405	-	-	2e+0	At1g21050	unknown protein	C.G.	S.X.	Please select
0.04	4e+0	32	TaAffx.90102.1.S1_at	BQ608389	-	-	2e+0	At3g07110	60S ribosomal protein L13A (RPL13aA)	C.G.	S.X.	Please select
0.03	4e+0	32	TaAffx.86192.1.S1_at	CA614702	-	-	1e+0	At1g01130	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At3g06110	819784	MKP2 (MAPK PHOSPHATASE 2)	Encodes a nuclear-localized MAP kinase phosphatase. Plants with reduced levels of MKP2 transcripts are hypersensitive to ozone and ozone-mediated activation of MPK3 and MPK6 is prolonged in these plants.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e+0	32	Glycine max	GmaAffx.77035.1.S1_at	BG047185	-	-	3e+0	At2g15345	enzyme inhibitor/ pectinesterase	C.G.	S.X.	Please select
0.04	8e+0	30	Hordeum vulgare	Contig20688_at	Contig20688	-	-	8e+0	At5g30500	galactinol synthase, putative	C.G.	S.X.	Please select
0.03	1e-1	38	Oryza sativa	Os08g0164800	AK120165.1	-	RNA-directed DNA polymerase (Reversetranscriptase) domain containing protein	2e+0	At5g17710	EMB1241 (embryo defective 1241)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.204436.1.S1_at	pmrna8713	hypothetical protein	-	7e-1	At1g24000	Bet v I allergen family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	32	Vitis vinifera	1620073_at	CB002740	-	-	1e+0	At2g23940	unknown protein	C.G.	S.X.	Please select
0.03	3e-2	38	Zea mays	Zm.14670.1.S1_at	BM381336	hypothetical protein LOC100193527	-	8e-5	At3g05280	integral membrane Yip1 family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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