Gene omics information

Query gene ID	TaAffx.56375.1.A1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	78.6	TaAffx.56375.1.A1_at	BJ238027	-	-	1e+0	At4g00467	-	S.X.	H.G.	Please select
0.55	76.8	Ta.22166.1.A1_x_at	CA727726	-	-	3e-1	At1g09230	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.50	72.4	Ta.7152.2.S1_at	CD894757	-	-	1e-12	At5g54670	ATK3 (ARABIDOPSIS THALIANA KINESIN 3)	S.X.	H.G.	Please select
0.40	58.4	Ta.9075.1.S1_at	BQ170302	-	-	6e-15	At1g22910	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.27	35.6	Ta.7152.1.A1_at	CA498144	-	-	2e+1	At5g04840	bZIP protein	S.X.	H.G.	Please select
0.17	19.8	Ta.6849.1.S1_at	CK163325	-	-	8e-1	At4g21190	emb1417 (embryo defective 1417)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.9	99.4	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
9.4	99.1	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
8.9	99.0	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
8.7	98.9	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
7.5	98.6	GSM298062	Crown tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.8	98.4	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
6.7	98.4	GSM298094	Crown tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.6	98.3	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
6.4	98.2	GSM298087	Crown tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.0	98.0	GSM298088	Crown tissue of Solstice at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	3e-41	169	TaAffx.56375.2.A1_at	CA653087	-	-	1e+0	At5g16430	-	C.G.	S.X.	Please select
0.04	2e-2	40	TaAffx.69939.1.S1_at	AJ613345	-	-	3e-1	At5g66400	RAB18 (RESPONSIVE TO ABA 18)	C.G.	S.X.	Please select
0.03	2e-2	40	TaAffx.23746.1.S1_at	CA731030	-	-	1e-4	At3g11420	fringe-related protein	C.G.	S.X.	Please select
0.04	7e-2	38	TaAffx.49827.1.A1_at	BJ262362	-	-	3e+0	At5g17340	unknown protein	C.G.	S.X.	Please select
0.03	7e-2	38	Ta.5079.2.S1_a_at	CA654780	-	-	3e-1	At3g16140	PSAH-1 (photosystem I subunit H-1)	C.G.	S.X.	Please select
0.03	7e-2	38	Ta.5079.2.S1_x_at	CA654780	-	-	3e-1	At3g16140	PSAH-1 (photosystem I subunit H-1)	C.G.	S.X.	Please select
0.03	7e-2	38	Ta.27399.1.S1_x_at	BQ579755	-	-	6e+0	At1g80580	ethylene-responsive element-binding family protein	C.G.	S.X.	Please select
0.04	7e-2	38	Ta.27399.2.S1_at	CA717949	-	-	1e+0	At5g36280	-	C.G.	S.X.	Please select
0.03	3e-1	36	TaAffx.78722.1.S1_at	CA728338	-	-	3e-1	At4g01420	CBL5 (CALCINEURIN B-LIKE PROTEIN 5)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At4g00467	6240657	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e+0	34	Glycine max	GmaAffx.45338.1.S1_at	BG405040	-	-	3e+0	At4g18580	unknown protein	C.G.	S.X.	Please select
0.89	0	791	Hordeum vulgare	rbags1m21_at	rbags1m21	-	-	3e-1	At4g00467	-	C.G.	S.X.	Please select
0.41	9e-114	410	Oryza sativa	Os03g0120200	AK121787.1	-	Remorin, C-terminal region domain containingprotein	8e-7	At2g02170	remorin family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.222513.1.S1_s_at	pmrna39995	hypothetical protein	-	3e-8	At5g60410	SIZ1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e+0	32	Vitis vinifera	1622474_at	CF373640	-	-	3e+0	At1g54445	-	C.G.	S.X.	Please select
0.04	5e-1	34	Zea mays	Zm.6285.1.A1_at	AI691255	hypothetical protein LOC100191495	-	1e+0	At5g54530	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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