Gene omics information

Query gene ID	TaAffx.55881.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	92.2	TaAffx.55881.1.S1_at	CA744754	-	-	2e-2	At2g47910	CRR6 (chlororespiratory reduction 6)	S.X.	H.G.	Please select
0.80	92.2	TaAffx.55881.1.S1_x_at	CA744754	-	-	2e-2	At2g47910	CRR6 (chlororespiratory reduction 6)	S.X.	H.G.	Please select
0.67	86.3	TaAffx.30393.1.S1_at	CA624950	-	-	2e-12	At2g47910	CRR6 (chlororespiratory reduction 6)	S.X.	H.G.	Please select
0.57	79.2	TaAffx.21181.1.S1_at	CA619363	-	-	7e-1	At5g18420	unknown protein	S.X.	H.G.	Please select
0.50	72.4	Ta.8050.1.S1_at	BQ161186	-	-	5e+0	At3g05625	binding	S.X.	H.G.	Please select
0.40	58.4	Ta.23163.1.A1_at	CK216129	-	-	3e-1	At1g06770	DRIP1 (DREB2A-INTERACTING PROTEIN 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.0	99.1	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.3	98.8	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.0	98.8	GSM324492	Si+ B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
7.9	98.7	GSM324486	Si- B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
7.7	98.7	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.5	98.6	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.3	98.6	GSM324491	Si+ B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
7.2	98.5	GSM250887	TcLr34_3dpi_mock_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.1	98.5	GSM250893	TcLr34_3dpi_mock_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.9	98.4	GSM324484	Si- B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.93	0	1015	TaAffx.55881.1.S1_x_at	CA744754	-	-	2e-2	At2g47910	CRR6 (chlororespiratory reduction 6)	C.G.	S.X.	Please select
0.51	4e-155	547	TaAffx.55881.2.A1_at	CA745291	-	-	2e-2	At2g47910	CRR6 (chlororespiratory reduction 6)	C.G.	S.X.	Please select
0.20	2e-58	226	TaAffx.30393.1.S1_at	CA624950	-	-	2e-12	At2g47910	CRR6 (chlororespiratory reduction 6)	C.G.	S.X.	Please select
0.03	2e-2	40	TaAffx.80336.2.S1_x_at	CA602042	-	-	1e+0	At1g62410	MIF4G domain-containing protein	C.G.	S.X.	Please select
0.04	8e-2	38	Ta.1954.1.A1_at	BE471198	-	-	1e+1	At5g09805	IDL3 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 3)	C.G.	S.X.	Please select
0.01	3e-1	36	Ta.9536.1.S1_at	CK208399	-	-	1e-31	At2g27200	GTP-binding family protein	C.G.	S.X.	Please select
0.01	3e-1	36	Ta.7270.1.S1_at	BT009258.1	-	-	5e-24	At2g38630	-	C.G.	S.X.	Please select
0.01	3e-1	36	Ta.6642.1.S1_a_at	BJ272560	-	-	1e-18	At3g61760	ADL1B (ARABIDOPSIS DYNAMIN-LIKE 1B)	C.G.	S.X.	Please select
0.02	3e-1	36	Ta.3164.1.S1_at	CD882187	-	-	4e-2	At3g04730	IAA16	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	2e-2	40	Arabidopsis thaliana	At2g47910	819403	CRR6 (chlororespiratory reduction 6)	Encodes a chloroplast thylakoid membrane protein. Required for the assembly/accumulation of the NAD(P)H dehydrogenase complex of the photosynthetic electron transport chain.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	PsAffx.C50000085_at	PsAffx.C50000085	-	-	6e+0	At4g27800	protein phosphatase 2C PPH1 / PP2C PPH1 (PPH1)	C.G.	S.X.	Please select
0.58	0	664	Hordeum vulgare	Contig12132_s_at	Contig12132	-	-	2e-12	At2g47910	CRR6 (chlororespiratory reduction 6)	C.G.	S.X.	Please select
0.32	5e-60	232	Oryza sativa	Os08g0167500	AK061061.1	-	-	1e-5	At2g47910	CRR6 (chlororespiratory reduction 6)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.218119.1.S1_at	pmrna33647	hypothetical protein	-	1e+1	At5g33370	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	9e-2	36	Vitis vinifera	1616677_at	CD713678	-	-	4e-10	At2g47910	CRR6 (chlororespiratory reduction 6)	C.G.	S.X.	Please select
0.06	1e-4	46	Zea mays	Zm.10119.1.A1_at	AW330816	hypothetical protein LOC100274094	-	6e-9	At2g47910	CRR6 (chlororespiratory reduction 6)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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