Gene omics information

Query gene ID	TaAffx.54209.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.88	94.4	TaAffx.54209.1.S1_at	CA684449	-	-	4e+0	At2g17442	unknown protein	S.X.	H.G.	Please select
0.25	32.1	Ta.16190.1.A1_x_at	CA602283	-	-	3e+0	At1g26100	cytochrome B561 family protein	S.X.	H.G.	Please select
0.25	32.1	Ta.1790.2.S1_a_at	CA698369	-	-	2e+1	Atmg00200	-	S.X.	H.G.	Please select
0.25	32.1	TaAffx.80471.1.S1_x_at	CA696665	-	-	3e-7	At1g24400	LHT2 (LYSINE HISTIDINE TRANSPORTER 2)	S.X.	H.G.	Please select
0.16	18.2	Ta.18595.1.S1_at	CA639368	-	-	1e+0	At3g13830	F-box family protein	S.X.	H.G.	Please select
0.15	17.1	TaAffx.15408.1.A1_at	CD453842	-	-	6e-4	At1g49730	protein kinase family protein	S.X.	H.G.	Please select
0.15	17.1	TaAffx.59343.1.S1_at	CA602787	-	-	4e+0	At2g23840	HNH endonuclease domain-containing protein	S.X.	H.G.	Please select
0.14	15.8	TaAffx.107742.1.S1_at	CA696088	-	-	2e-2	At1g10420	-	S.X.	H.G.	Please select
0.14	15.8	Ta.6155.2.S1_a_at	CA695243	-	-	3e-1	At5g55340	long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein	S.X.	H.G.	Please select
0.13	14.6	Ta.6046.2.S1_a_at	CA641644	-	-	5e-9	At5g54870	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
38.0	99.9	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
22.9	99.8	GSM143516	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
12.9	99.4	GSM143518	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
11.5	99.3	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
11.3	99.3	GSM143505	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
9.1	99.0	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
7.9	98.7	GSM143524	Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
7.2	98.5	GSM250885	TcLr1_3dpi_mock_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.8	98.4	GSM143515	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
6.7	98.4	GSM250905	TcLr34_7dpi_mock_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	1e-95	349	Ta.22543.1.S1_x_at	CN009270	-	-	5e+0	At1g18400	BEE1 (BR Enhanced Expression 1)	C.G.	S.X.	Please select
0.31	8e-57	220	TaAffx.54582.1.S1_at	CA679753	-	-	3e+0	At3g62510	protein disulfide isomerase-related	C.G.	S.X.	Please select
0.03	4e-3	42	Ta.26738.1.A1_at	CD491007	-	-	3e-2	At5g20720	CPN20 (CHAPERONIN 20)	C.G.	S.X.	Please select
0.04	7e-2	38	TaAffx.51996.1.S1_at	CA715048	-	-	3e+0	At5g47080	CKB1	C.G.	S.X.	Please select
0.03	3e-1	36	TaAffx.71408.1.S1_at	CA608015	-	-	5e-1	At1g49220	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	1e+0	34	TaAffx.67934.1.S1_at	BJ284251	-	-	7e-1	At5g62500	ATEB1B (END BINDING PROTEIN 1B)	C.G.	S.X.	Please select
0.03	1e+0	34	Ta.26382.1.A1_at	CD490925	-	-	1e+0	At3g19580	AZF2 (ARABIDOPSIS ZINC-FINGER PROTEIN 2)	C.G.	S.X.	Please select
0.03	1e+0	34	Ta.21127.1.S1_at	CA607301	-	-	6e+0	At5g55893	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	32	TaAffx.9420.1.S1_s_at	CA599341	-	-	4e-1	At1g79970	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e+0	32	Arabidopsis thaliana	At2g17442	3768659	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e+0	34	Glycine max	Gma.13653.1.A1_at	CD402368	-	-	2e+0	At5g54531	unknown protein	C.G.	S.X.	Please select
0.04	3e-2	38	Hordeum vulgare	HVSMEi0009N09r2_at	HVSMEi0009N09r2	-	-	6e-5	At1g05840	aspartyl protease family protein	C.G.	S.X.	Please select
0.14	5e-4	46	Oryza sativa	Os01g0922700	9629.m06891	-	Hypothetical protein	7e-2	At1g27760	interferon-related developmental regulator family protein / IFRD protein family	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	6e+0	32	Populus trichocarpa	PtpAffx.6537.2.A1_a_at	CV226718	hypothetical protein	-	3e+0	At1g23440	pyrrolidone-carboxylate peptidase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e+0	32	Vitis vinifera	1618203_at	CA809351	hypothetical protein LOC100246896	-	1e+0	At4g21740	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.6905.3.S1_at	CD444092	Histone H1-like protein	-	3e-1	At4g04620	ATG8B (autophagy 8b)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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