Gene omics information

Query gene ID	TaAffx.54157.2.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	TaAffx.54157.2.S1_at	CA663807	-	-	6e-3	At1g74550	CYP98A9	S.X.	H.G.	Please select
0.83	93.4	Ta.22415.1.S1_x_at	CA743955	-	-	7e+0	At5g24314	PTAC7	S.X.	H.G.	Please select
0.73	89.1	Ta.303.3.S1_at	AJ610447	-	-	2e+0	At2g30860	ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)	S.X.	H.G.	Please select
0.67	86.3	TaAffx.81608.1.S1_at	CA684076	-	-	4e+0	At5g02750	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.67	86.3	Ta.303.3.S1_x_at	AJ610447	-	-	2e+0	At2g30860	ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)	S.X.	H.G.	Please select
0.53	74.9	Ta.23324.1.S1_at	CA681101	-	-	2e+1	At5g46730	glycine-rich protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
73.3	100.0	GSM298081	Leaf tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
65.2	99.9	GSM298082	Leaf tissue of Solstice at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
48.2	99.9	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
37.9	99.9	GSM298057	Leaf tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
32.9	99.9	GSM298058	Leaf tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
32.7	99.9	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
18.3	99.7	GSM298079	Leaf tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
12.0	99.4	GSM298080	Leaf tissue of Solstice at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.8	97.2	GSM298077	Leaf tissue of Solstice at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM298078	Leaf tissue of Solstice at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.68	0	728	TaAffx.54157.1.S1_at	CA744476	-	-	4e+0	At5g41600	BTI3 (VIRB2-INTERACTING PROTEIN 3)	C.G.	S.X.	Please select
0.27	1e-38	161	Ta.174.1.S1_at	AB036772.1	-	-	1e+0	At2g24180	CYP71B6 (CYTOCHROME P450 71B6)	C.G.	S.X.	Please select
0.17	9e-33	141	Ta.22415.1.S1_x_at	CA743955	-	-	7e+0	At5g24314	PTAC7	C.G.	S.X.	Please select
0.39	2e-30	133	TaAffx.119714.1.A1_at	BJ261026	-	-	4e-3	At1g74550	CYP98A9	C.G.	S.X.	Please select
0.30	5e-19	95	TaAffx.38521.1.A1_at	BJ221695	-	-	1e+0	At4g15350	CYP705A2	C.G.	S.X.	Please select
0.19	1e-16	87	Ta.22615.1.S1_at	CA663737	-	-	6e+0	At3g62320	nucleic acid binding	C.G.	S.X.	Please select
0.12	4e-10	65	TaAffx.53952.1.S1_at	CA687476	-	-	3e+0	At4g11650	ATOSM34 (osmotin 34)	C.G.	S.X.	Please select
0.08	7e-9	61	Ta.25832.1.A1_at	CD453384	-	-	4e-4	At3g32047	electron carrier/ heme binding / iron ion binding / monooxygenase	C.G.	S.X.	Please select
0.12	4e-7	56	Ta.18692.1.S1_at	CA640672	-	-	3e+0	At3g32130	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	6e-3	42	Arabidopsis thaliana	At1g74550	843796	CYP98A9	member of CYP98A	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.89060.1.S1_at	CK605664	-	-	2e-2	At1g50560	CYP705A25	C.G.	S.X.	Please select
0.16	9e-19	93	Hordeum vulgare	Contig21387_at	Contig21387	-	-	3e-1	At5g41761	unknown protein	C.G.	S.X.	Please select
0.03	1e-2	42	Oryza sativa	OsAffx.20701.2.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.208923.1.S1_at	pmrna17693	hypothetical protein	-	6e-1	At5g06240	emb2735 (embryo defective 2735)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	4e-1	34	Vitis vinifera	1613359_at	CF605336	hypothetical protein LOC100264043	-	4e+0	At2g46410	CPC (CAPRICE)	C.G.	S.X.	Please select
0.07	3e-6	52	Zea mays	Zm.8654.1.A1_at	BM334074	hypothetical protein LOC100280034	-	3e-2	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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