Gene omics information

Query gene ID	TaAffx.53897.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	78.6	TaAffx.53897.1.S1_at	CA687979	-	-	7e-1	At1g23910	-	S.X.	H.G.	Please select
0.60	81.0	Ta.14978.1.S1_at	CA686243	-	-	1e+0	At5g11340	GCN5-related N-acetyltransferase (GNAT) family protein	S.X.	H.G.	Please select
0.57	79.2	Ta.15046.1.S1_at	CA688055	-	-	1e+1	At5g15254	unknown protein	S.X.	H.G.	Please select
0.46	66.8	Ta.14975.1.S1_at	CA686222	-	-	3e-1	At3g60490	AP2 domain-containing transcription factor TINY, putative	S.X.	H.G.	Please select
0.29	39.2	TaAffx.81234.1.S1_at	CA691109	-	-	7e-12	At4g17390	60S ribosomal protein L15 (RPL15B)	S.X.	H.G.	Please select
0.21	25.5	TaAffx.107769.1.S1_at	CA695678	-	-	6e-2	At2g30230	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
181.6	100.0	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
161.6	100.0	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
11.9	99.4	GSM324489	Si- B+ rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.3	96.7	GSM324494	Si+ B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
1.7	87.1	GSM324486	Si- B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
0.5	61.1	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
0.4	56.9	GSM324484	Si- B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
0.4	56.9	GSM324493	Si+ B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
0.3	52.1	GSM324485	Si- B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
0.2	46.5	GSM143525	Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	8e-1	34	TaAffx.36560.1.S1_at	AJ610991	-	-	3e-1	At2g28380	DRB2 (DSRNA-BINDING PROTEIN 2)	C.G.	S.X.	Please select
0.03	1e+1	30	TaAffx.9068.1.S1_s_at	CA613991	-	-	4e+0	At4g01000	ubiquitin family protein	C.G.	S.X.	Please select
0.03	1e+1	30	TaAffx.9068.1.S1_x_at	CA613991	-	-	4e+0	At4g01000	ubiquitin family protein	C.G.	S.X.	Please select
0.04	1e+1	30	TaAffx.55106.1.S1_at	CA671977	-	-	1e+0	At5g16090	-	C.G.	S.X.	Please select
0.03	1e+1	30	TaAffx.53823.1.S1_at	CA688763	-	-	4e-3	At5g20680	unknown protein	C.G.	S.X.	Please select
0.04	1e+1	30	TaAffx.19352.2.S1_at	CA623353	-	-	2e-14	At5g43600	UAH (UREIDOGLYCOLATE AMIDOHYDROLASE)	C.G.	S.X.	Please select
0.03	1e+1	30	TaAffx.106492.1.S1_at	CA717701	-	-	4e+0	At5g60490	FLA12	C.G.	S.X.	Please select
0.02	1e+1	30	Ta.9385.1.A1_at	BJ230373	-	-	1e-5	At1g15520	PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)	C.G.	S.X.	Please select
0.03	1e+1	30	Ta.7610.3.S1_at	BJ226466	-	-	4e-4	At5g11560	catalytic	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	7e-1	34	Arabidopsis thaliana	At1g23910	839002	-	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-1	36	Glycine max	GmaAffx.27496.2.S1_at	BM523609	-	-	6e-2	At3g61160	shaggy-related protein kinase beta / ASK-beta (ASK2)	C.G.	S.X.	Please select
0.03	6e+0	30	Hordeum vulgare	HVSMEg0015N22r2_at	HVSMEg0015N22r2	-	-	1e+0	At4g28703	-	C.G.	S.X.	Please select
0.02	6e+0	32	Oryza sativa	Os12g0424000	9640.m02244	-	-	8e-65	Atmg01170	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e+0	32	Populus trichocarpa	PtpAffx.9797.1.S1_at	CK103892	hypothetical protein	-	3e+0	At2g35345	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	9e-1	32	Vitis vinifera	1616233_at	CA811121	hypothetical protein LOC100259625	-	2e+0	At4g15670	glutaredoxin family protein	C.G.	S.X.	Please select
0.04	5e+0	30	Zea mays	ZmAffx.441.1.A1_s_at	AI676998	-	-	3e+0	At3g54000	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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